RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 FCRL5Q96RD9 977 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 EIF2B3Q9NR50 452 aaKnown RBP12.72□□□□□ -0.37
UPF1-208ENST00000600012 CLCA2Q9UQC9 943 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 HS3ST2Q9Y278 367 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 FCF1Q9Y324 198 aaKnown RBP12.72□□□□□ -0.37
UPF1-208ENST00000600012 SMG1Q96Q15 3661 aaKnown RBP12.72□□□□□ -0.37
UPF1-208ENST00000600012 K7ERQ8 282 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 BNIP3LO60238 219 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 AP2A1O95782 977 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 MT-CO1P00395 513 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 CD86P42081 329 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 GRIA1P42261 906 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 TAS2R38P59533 333 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 E2F1Q01094 437 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 DHX9Q08211 1270 aaKnown RBP12.71□□□□□ -0.37
UPF1-208ENST00000600012 RFTN1Q14699 578 aaPredicted RBP12.71□□□□□ -0.37
UPF1-208ENST00000600012 FNBP1LQ5T0N5 605 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 UBAP2Q5T6F2 1119 aaKnown RBP12.71□□□□□ -0.37
UPF1-208ENST00000600012 NEK5Q6P3R8 708 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 TMEM145Q8NBT3 493 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 IPMKQ8NFU5 416 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 SERPINB12Q96P63 405 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 PSKH2Q96QS6 385 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 RBM15Q96T37 977 aaKnown RBP eCLIP12.71□□□□□ -0.37
UPF1-208ENST00000600012 SEMA3CQ99985 751 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 APOL2Q9BQE5 337 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 MGME1Q9BQP7 344 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 POLR1EQ9GZS1 481 aaKnown RBP12.71□□□□□ -0.37
UPF1-208ENST00000600012 SLC25A51Q9H1U9 297 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 PRORYQ9H606 182 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 SAYSD1Q9NPB0 183 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 LHX3Q9UBR4 397 aa12.71□□□□□ -0.37
UPF1-208ENST00000600012 TK2O00142 265 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 SMAPO00193 183 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 KPNA3O00505 521 aaPredicted RBP12.7□□□□□ -0.38
UPF1-208ENST00000600012 TRIM38O00635 465 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 SMAD6O43541 496 aaKnown RBP12.7□□□□□ -0.38
UPF1-208ENST00000600012 SIGLEC6O43699 453 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 BRINP1O60477 761 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 USP12O75317 370 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 PMPCBO75439 489 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 ANXA9O76027 345 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 PRNPP04156 253 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 MMP2P08253 660 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 THEGLP0DJG4 465 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 SRCP12931 536 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 AKT2P31751 481 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 HSPA9P38646 679 aaKnown RBP12.7□□□□□ -0.38
UPF1-208ENST00000600012 SERPINH1P50454 418 aaKnown RBP12.7□□□□□ -0.38
UPF1-208ENST00000600012 GEMP55040 296 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 ARL4CP56559 192 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 RHOAP61586 193 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 DAB2P98082 770 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 INSM1Q01101 510 aaPredicted RBP12.7□□□□□ -0.38
UPF1-208ENST00000600012 PDIA2Q13087 525 aaKnown RBP12.7□□□□□ -0.38
UPF1-208ENST00000600012 IHHQ14623 411 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 FASTKD3Q14CZ7 662 aaKnown RBP12.7□□□□□ -0.38
UPF1-208ENST00000600012 PCSK7Q16549 785 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 HIF1AQ16665 826 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 BBS9Q3SYG4 887 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 MSS51Q4VC12 460 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 HP1BP3Q5SSJ5 553 aaPredicted RBP12.7□□□□□ -0.38
UPF1-208ENST00000600012 PIP5KL1Q5T9C9 394 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 KCTD11Q693B1 232 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 RETSATQ6NUM9 610 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 KDELC1Q6UW63 502 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 PPP1R21Q6ZMI0 780 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 CENPUQ71F23 418 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 CAND1Q86VP6 1230 aaKnown RBP12.7□□□□□ -0.38
UPF1-208ENST00000600012 KLHDC8BQ8IXV7 354 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 DCBLD1Q8N8Z6 715 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 ATP11CQ8NB49 1132 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 MCUQ8NE86 351 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 OR4C6Q8NH72 309 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 ARRDC2Q8TBH0 407 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 FGF11Q92914 225 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 IMP4Q96G21 291 aaKnown RBP12.7□□□□□ -0.38
UPF1-208ENST00000600012 FICDQ9BVA6 458 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 TXLNGYQ9BZA5 131 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 FOXP3Q9BZS1 431 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 CDC42EP4Q9H3Q1 356 aaKnown RBP12.7□□□□□ -0.38
UPF1-208ENST00000600012 DYRK4Q9NR20 520 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 PIH1D1Q9NWS0 290 aaKnown RBP12.7□□□□□ -0.38
UPF1-208ENST00000600012 ZNF446Q9NWS9 450 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 CA5BQ9Y2D0 317 aa12.7□□□□□ -0.38
UPF1-208ENST00000600012 AAR2Q9Y312 384 aaKnown RBP12.7□□□□□ -0.38
UPF1-208ENST00000600012 GCN1Q92616 2671 aaKnown RBP12.7□□□□□ -0.38
UPF1-208ENST00000600012 A0A1W2PQU0 124 aa12.69□□□□□ -0.38
UPF1-208ENST00000600012 GOLGA6CA6NDK9 693 aa12.69□□□□□ -0.38
UPF1-208ENST00000600012 GOLGA6BA6NDN3 693 aa12.69□□□□□ -0.38
UPF1-208ENST00000600012 ATXN7O15265 892 aaPredicted RBP12.69□□□□□ -0.38
UPF1-208ENST00000600012 SLC31A1O15431 190 aa12.69□□□□□ -0.38
UPF1-208ENST00000600012 PPFIA2O75334 1257 aa12.69□□□□□ -0.38
UPF1-208ENST00000600012 AVILO75366 819 aa12.69□□□□□ -0.38
UPF1-208ENST00000600012 CTSLP07711 333 aa12.69□□□□□ -0.38
UPF1-208ENST00000600012 GOLGA6DP0CG33 693 aa12.69□□□□□ -0.38
UPF1-208ENST00000600012 CR2P20023 1033 aa12.69□□□□□ -0.38
UPF1-208ENST00000600012 HNRNPA2B1P22626 353 aaKnown RBP12.69□□□□□ -0.38
UPF1-208ENST00000600012 DGKAP23743 735 aa12.69□□□□□ -0.38
UPF1-208ENST00000600012 GEMIN4P57678 1058 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms