RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 OTOGQ6ZRI0 2925 aa10.09□□□□□ -0.79
TRIM28-210ENST00000597618 HIVEP3Q5T1R4 2406 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 CDC14CA4D256 554 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 ARHGAP42A6NI28 874 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 MAP3K6O95382 1288 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 RECKO95980 971 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 PDGFAP04085 211 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 MMEP08473 750 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 ANKRD34CP0C6C1 535 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 VIPR1P32241 457 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 HTR7P34969 479 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 ETV3P41162 512 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 MTIF2P46199 727 aaKnown RBP10.08□□□□□ -0.8
TRIM28-210ENST00000597618 POLD2P49005 469 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 NDST2P52849 883 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 EPHA4P54764 986 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 HHEXQ03014 270 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 NSUN2Q08J23 767 aaKnown RBP eCLIP10.08□□□□□ -0.8
TRIM28-210ENST00000597618 RFTN1Q14699 578 aaPredicted RBP10.08□□□□□ -0.8
TRIM28-210ENST00000597618 DOK6Q6PKX4 331 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 APLFQ8IW19 511 aaPredicted RBP10.08□□□□□ -0.8
TRIM28-210ENST00000597618 JOSD2Q8TAC2 188 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 EPS8L1Q8TE68 723 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 NCSTNQ92542 709 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 SH3KBP1Q96B97 665 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 STAMBPL1Q96FJ0 436 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 TWSG1Q9GZX9 223 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 EPB41L1Q9H4G0 881 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 SARS2Q9NP81 518 aaKnown RBP10.08□□□□□ -0.8
TRIM28-210ENST00000597618 CASS4Q9NQ75 786 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 SIDT1Q9NXL6 827 aaKnown RBP10.08□□□□□ -0.8
TRIM28-210ENST00000597618 RWDD2AQ9UIY3 292 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 MAP4K5Q9Y4K4 846 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 POLQO75417 2590 aa10.08□□□□□ -0.8
TRIM28-210ENST00000597618 ESPL1Q14674 2120 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.07□□□□□ -0.8
TRIM28-210ENST00000597618 A0A1W2PQ67 120 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 PSMD11O00231 422 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 KATNA1O75449 491 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 SORBS2O94875 1100 aaKnown RBP10.07□□□□□ -0.8
TRIM28-210ENST00000597618 HEXIM1O94992 359 aaKnown RBP10.07□□□□□ -0.8
TRIM28-210ENST00000597618 FURINP09958 794 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 KRT3P12035 628 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 GPD1P21695 349 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 TNFRSF8P28908 595 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 MAPK9P45984 424 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 PGDP52209 483 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 AIF1P55008 147 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 RIPPLY3P57055 190 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 TPI1P60174 286 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 FOXM1Q08050 763 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 NFATC2Q13469 925 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 PYCR3Q53H96 274 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 DENND2CQ68D51 928 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 LYSMD3Q7Z3D4 306 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 TMEM135Q86UB9 458 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 ZNF677Q86XU0 584 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 GALNT13Q8IUC8 556 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 PLXDC1Q8IUK5 500 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 LZTR1Q8N653 840 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 GALNT6Q8NCL4 622 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 SEC14L1Q92503 715 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 CELF6Q96J87 481 aaKnown RBP10.07□□□□□ -0.8
TRIM28-210ENST00000597618 C11orf70Q9BRQ4 267 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 SLC29A3Q9BZD2 475 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 SP110Q9HB58 689 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 KLHL3Q9UH77 587 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 PLEKHM1Q9Y4G2 1056 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 PCDHGA6Q9Y5G7 932 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 FHOD1Q9Y613 1164 aa10.07□□□□□ -0.8
TRIM28-210ENST00000597618 MN1Q10571 1320 aaPredicted RBP10.07□□□□□ -0.8
TRIM28-210ENST00000597618 TRBV23OR9-2A0A075B6M9 112 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 PIPSLA2A3N6 862 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 F8VZ95 297 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 SOCS5O75159 536 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 CREG1O75629 220 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 DNAJB5O75953 348 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 CPP00450 1065 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 CYP1A1P04798 512 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-210ENST00000597618 CCNYL3P0C7X3 344 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 CYP2A6P11509 494 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-210ENST00000597618 SLC2A4P14672 509 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 ZNF28P17035 718 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 ELAVL4P26378 380 aaKnown RBP10.06□□□□□ -0.8
TRIM28-210ENST00000597618 COL8A1P27658 744 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 CASP14P31944 242 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 RFC1P35251 1148 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-210ENST00000597618 GARSP41250 739 aaKnown RBP10.06□□□□□ -0.8
TRIM28-210ENST00000597618 GPR1P46091 355 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 PAPOLAP51003 745 aaKnown RBP10.06□□□□□ -0.8
TRIM28-210ENST00000597618 SCNN1BP51168 640 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 RENBPP51606 427 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 GSCP56915 257 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-210ENST00000597618 DPTQ07507 201 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 SEMA5AQ13591 1074 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 MAN2A1Q16706 1144 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 NADK2Q4G0N4 442 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 KLHDC7AQ5VTJ3 777 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 DPY19L2P1Q6NXN4 242 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 SCYL2Q6P3W7 929 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms