RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 BRD3Q15059 726 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 TAF1BQ53T94 588 aaPredicted RBP12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 ZNF805Q5CZA5 627 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 ZNF776Q68DI1 518 aaPredicted RBP12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 CASC4Q6P4E1 433 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 BRAT1Q6PJG6 821 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 RANBP10Q6VN20 620 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 ZNF534Q76KX8 674 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 MMAAQ8IVH4 418 aaKnown RBP12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 SLC41A1Q8IVJ1 513 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 DEFB119Q8N690 84 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 PPHLN1Q8NEY8 458 aaKnown RBP12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 OR2T3Q8NH03 318 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 ERLEC1Q96DZ1 483 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 KLHL32Q96NJ5 620 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 TRIB3Q96RU7 358 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 SAYSD1Q9NPB0 183 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 PIH1D1Q9NWS0 290 aaKnown RBP12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 ABCA12Q86UK0 2595 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 TRAFD1O14545 582 aaPredicted RBP12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 RRP8O43159 456 aaKnown RBP12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 SLC28A2O43868 658 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 ADAM23O75077 832 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 AVILO75366 819 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 KRT38O76015 456 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 ADH1BP00325 375 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 CTSLP07711 333 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 MYBL2P10244 700 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 ITGB7P26010 798 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 MGAT1P26572 445 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 GRIA1P42261 906 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 CHRNA4P43681 627 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 NPY2RP49146 381 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 RPL6Q02878 288 aaKnown RBP12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 TLE3Q04726 772 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 LAMB3Q13751 1172 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 SEPT6Q14141 434 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 IHHQ14623 411 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 POM121L1PQ3SYA9 428 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 FNBP1LQ5T0N5 605 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 EMBQ6PCB8 327 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 USP45Q70EL2 814 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 CAND1Q86VP6 1230 aaKnown RBP12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 ZBED8Q8IZ13 594 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 SNIP1Q8TAD8 396 aaKnown RBP12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 HCAR2Q8TDS4 363 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 LRRC39Q96DD0 335 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 NSMCE3Q96MG7 304 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 PWWP2AQ96N64 755 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 SRPK1Q96SB4 655 aaKnown RBP12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 IL22Q9GZX6 179 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 RSPH9Q9H1X1 276 aaPredicted RBP12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 ARNT2Q9HBZ2 717 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 DKK3Q9UBP4 350 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 IL17BQ9UHF5 180 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 PPM1HQ9ULR3 514 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 PHTF1Q9UMS5 762 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 MAD1L1Q9Y6D9 718 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 ANKRD36A6QL64 1941 aa12.07□□□□□ -0.48
SHKBP1-213ENST00000597325 MYO18AQ92614 2054 aaKnown RBP12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 TSPAN11A1L157 253 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 CCDC151A5D8V7 595 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 SDR42E2A6NKP2 422 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 FZD6O60353 706 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 PRLP01236 227 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 PDHA1P08559 390 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 ZNF883P0CG24 379 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 TPH1P17752 444 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 MAGEA3P43357 314 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 DHX9Q08211 1270 aaKnown RBP12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 CCDC15Q0P6D6 951 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 SFSWAPQ12872 951 aaKnown RBP12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 GRIK2Q13002 908 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 POU6F1Q14863 301 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 CST6Q15828 149 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 QPCTQ16769 361 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 TTC31Q49AM3 519 aaPredicted RBP12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 ARMC3Q5W041 872 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 DENND2CQ68D51 928 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 DENND5AQ6IQ26 1287 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 ERAP2Q6P179 960 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 CACUL1Q86Y37 369 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 BLOC1S5Q8TDH9 187 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 SETD7Q8WTS6 366 aaKnown RBP12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 ECHDC3Q96DC8 303 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 NXPE2Q96DL1 559 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 STAMBPL1Q96FJ0 436 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 FAM129BQ96TA1 746 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 SYBUQ9NX95 663 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 HACD3Q9P035 362 aa12.06□□□□□ -0.48
SHKBP1-213ENST00000597325 CKAP5Q14008 2032 aa12.05□□□□□ -0.48
SHKBP1-213ENST00000597325 A0A1W2PQF6 199 aa12.05□□□□□ -0.48
SHKBP1-213ENST00000597325 TCRBV21S2A2A0A5A6 115 aa12.05□□□□□ -0.48
SHKBP1-213ENST00000597325 HEATR9A2RTY3 570 aa12.05□□□□□ -0.48
SHKBP1-213ENST00000597325 C16orf96A6NNT2 1141 aa12.05□□□□□ -0.48
SHKBP1-213ENST00000597325 ANKRD66B4E2M5 251 aa12.05□□□□□ -0.48
SHKBP1-213ENST00000597325 E7ESA3 106 aa12.05□□□□□ -0.48
SHKBP1-213ENST00000597325 CRTAMO95727 393 aa12.05□□□□□ -0.48
SHKBP1-213ENST00000597325 SLC4A1P02730 911 aa12.05□□□□□ -0.48
SHKBP1-213ENST00000597325 DNTTP04053 509 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms