RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 SOD1P00441 154 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 PECAM1P16284 738 aaPredicted RBP15.21■□□□□ 0.03
TRIM28-203ENST00000593582 GNPDA1P46926 289 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 MARCKSL1P49006 195 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 ILF3Q12906 894 aaKnown RBP eCLIP15.21■□□□□ 0.03
TRIM28-203ENST00000593582 SPIDRQ14159 915 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 GALNT3Q14435 633 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 PRKD1Q15139 912 aaPredicted RBP15.21■□□□□ 0.03
TRIM28-203ENST00000593582 GPBAR1Q8TDU6 330 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 CCDC74AQ96AQ1 378 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 HIC2Q96JB3 615 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 RIOK2Q9BVS4 552 aaKnown RBP15.21■□□□□ 0.03
TRIM28-203ENST00000593582 GSDMCQ9BYG8 508 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 TRNAU1APQ9NX07 287 aaKnown RBP15.21■□□□□ 0.03
TRIM28-203ENST00000593582 PKD2L2Q9NZM6 624 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 SUFUQ9UMX1 484 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 SLC17A4Q9Y2C5 497 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 GPSM3Q9Y4H4 160 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 APC2O95996 2303 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 hCG_1818297A0A087WSY0 165 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 RGSL1A5PLK6 1076 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 RCCD1A6NED2 376 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 B4DGG1 531 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 BRINP1O60477 761 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 FUCA1P04066 466 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 IVLP07476 585 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 PTPN3P26045 913 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 POLD2P49005 469 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 SPINT3P49223 89 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 ADCY2Q08462 1091 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 PEX6Q13608 980 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 SLC14A2Q15849 920 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 PPP2R5EQ16537 467 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 PCSK7Q16549 785 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 ISXQ2M1V0 245 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 FAM182AQ5T1J6 154 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 CCDC70Q6NSX1 233 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 OGFOD3Q6PK18 319 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 DOK6Q6PKX4 331 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 KDELC2Q7Z4H8 507 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 ZC3H18Q86VM9 953 aaKnown RBP15.2■□□□□ 0.02
TRIM28-203ENST00000593582 GPR156Q8NFN8 814 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 CCL4L1Q8NHW4 92 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 KIAA1524Q8TCG1 905 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 KRT35Q92764 455 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 TEKT5Q96M29 485 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 TRIB3Q96RU7 358 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 BAG1Q99933 345 aaPredicted RBP15.2■□□□□ 0.02
TRIM28-203ENST00000593582 SYNDIG1Q9H7V2 258 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 GLOD4Q9HC38 313 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 DUSP10Q9Y6W6 482 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 ACACAQ13085 2346 aa15.2■□□□□ 0.02
TRIM28-203ENST00000593582 LRP4O75096 1905 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 BTNL10A8MVZ5 291 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 MPOP05164 745 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 GLB1P16278 677 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 CTNNA1P35221 906 aaKnown RBP15.19■□□□□ 0.02
TRIM28-203ENST00000593582 ACTN2P35609 894 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 COPS2P61201 443 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 GABREP78334 506 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 CDK18Q07002 472 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 C14orf28Q4W4Y0 310 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 CERCAMQ5T4B2 595 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 CCDC181Q5TID7 509 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 RAD9BQ6WBX8 426 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 KIAA1328Q86T90 577 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 LSMEM2Q8N112 164 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 SPATA22Q8NHS9 363 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 TADA1Q96BN2 335 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 HAUS1Q96CS2 278 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 DCBLD2Q96PD2 775 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 GFM1Q96RP9 751 aaKnown RBP15.19■□□□□ 0.02
TRIM28-203ENST00000593582 AGAP2Q99490 1192 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 HEMGNQ9BXL5 484 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 CDH19Q9H159 772 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 FAM83DQ9H4H8 585 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 ZFYVE1Q9HBF4 777 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 MAGEE1Q9HCI5 957 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 RABGEF1Q9UJ41 708 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 APPL1Q9UKG1 709 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 TMEM98Q9Y2Y6 226 aa15.19■□□□□ 0.02
TRIM28-203ENST00000593582 REXO2Q9Y3B8 237 aaKnown RBP15.19■□□□□ 0.02
TRIM28-203ENST00000593582 NBEAQ8NFP9 2946 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 MYLKQ15746 1914 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 A0A087WV48 116 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 CCDC66A2RUB6 948 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 HACD1B0YJ81 288 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 NTN3O00634 580 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-203ENST00000593582 INPP4BO15327 924 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 RRP8O43159 456 aaKnown RBP15.18■□□□□ 0.02
TRIM28-203ENST00000593582 NOBOXO60393 691 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 PMPCBO75439 489 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 MT-CYBP00156 380 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-203ENST00000593582 PNLIPP16233 465 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 ADCY8P40145 1251 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 TNNT3P45378 269 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-203ENST00000593582 LSSP48449 732 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 VAV2P52735 878 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 WASHC5Q12768 1159 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 TBC1D25Q3MII6 688 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms