RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 LIG4P49917 911 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 NCBP1Q09161 790 aaKnown RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 ITGADQ13349 1161 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 PPP2R5CQ13362 524 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 ATP1A4Q13733 1029 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 VGLL4Q14135 290 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 STXBP2Q15833 593 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 MEA1Q16626 185 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 PDCD4Q53EL6 469 aaKnown RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 ZNF484Q5JVG2 852 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CCDC144NLQ6NUI1 221 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 FAM83HQ6ZRV2 1179 aaPredicted RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CD302Q8IX05 232 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 SRRM1Q8IYB3 904 aaKnown RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CCDC170Q8IYT3 715 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 KCTD6Q8NC69 237 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 BEND2Q8NDZ0 799 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 ANKRD20A12PQ8NF67 263 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 NFKBIDQ8NI38 313 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 SLC35B2Q8TB61 432 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 KLHL29Q96CT2 875 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 TBC1D31Q96DN5 1066 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 HARBI1Q96MB7 349 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 KLHL32Q96NJ5 620 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 NEK1Q96PY6 1258 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 PPP1R10Q96QC0 940 aaKnown RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 FYTTD1Q96QD9 318 aaKnown RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CITED2Q99967 270 aaPredicted RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 ABHD14AQ9BUJ0 271 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 NPLQ9BXD5 320 aaPredicted RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 ACTRT3Q9BYD9 372 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 SLC32A1Q9H598 525 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 PLEKHA2Q9HB19 425 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 SLC38A10Q9HBR0 1119 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 GPR35Q9HC97 309 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 PRDM8Q9NQV8 689 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 PAPOLBQ9NRJ5 636 aaKnown RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 PCDHB16Q9NRJ7 776 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 MTRRQ9UBK8 725 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 AGAP1Q9UPQ3 857 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CNTN6Q9UQ52 1028 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 PA2G4Q9UQ80 394 aaKnown RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 DTNAQ9Y4J8 743 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 MTCH2Q9Y6C9 303 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 KCNE2Q9Y6J6 123 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 ZFHX4Q86UP3 3567 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 SH2D7A6NKC9 451 aaPredicted RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 A6NL46 340 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 PDHXO00330 501 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 ZBTB5O15062 677 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 DNAJB5O75953 348 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 WDR47O94967 919 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 LYPLA2O95372 231 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 GH1P01241 217 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CNPP09543 421 aaKnown RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CYP4B1P13584 511 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 STMN1P16949 149 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 IFNAR1P17181 557 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 GABRB3P28472 473 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 ATP5DP30049 168 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CIITAP33076 1130 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 GUCY1A2P33402 732 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CCR10P46092 362 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 HDAC4P56524 1084 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CDC37Q16543 378 aaPredicted RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 BAK1Q16611 211 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 NTRK2Q16620 822 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 MANEALQ5VSG8 457 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 TMEM268Q5VZI3 342 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 LIN54Q6MZP7 749 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 HMBOX1Q6NT76 420 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 DENND1BQ6P3S1 775 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CTR9Q6PD62 1173 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 TSSK4Q6SA08 328 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 NEK10Q6ZWH5 1172 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 OTUD6AQ7L8S5 288 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 ADCK2Q7Z695 626 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 LCA5Q86VQ0 697 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CERS5Q8N5B7 392 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 SIRT6Q8N6T7 355 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 C10orf53Q8N6V4 93 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 RFWD2Q8NHY2 731 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CCDC26Q8TAB7 109 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 NCSTNQ92542 709 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 USP6NLQ92738 828 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 EDC3Q96F86 508 aaKnown RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 MSANTD3Q96H12 275 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 ZNF396Q96N95 335 aaPredicted RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 BBS4Q96RK4 519 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 C17orf80Q9BSJ5 609 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 KLHL4Q9C0H6 718 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 NT5C3AQ9H0P0 336 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 C2orf40Q9H1Z8 148 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 TDRD3Q9H7E2 651 aaKnown RBP1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CTNNAL1Q9UBT7 734 aa1.98□□□□□ -2.09
SMCHD1-211ENST00000584897 CNTNAP2Q9UHC6 1331 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 PTPRSQ13332 1948 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 H3BQ06 376 aaPredicted RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 ZC3H11AO75152 810 aaKnown RBP eCLIP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 TAF5LO75529 589 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms