RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 CTBSQ01459 385 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 IHHQ14623 411 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 NR1D2Q14995 579 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 ANKRD20A8PQ5CZ79 823 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 TIGD7Q6NT04 549 aaPredicted RBP16.03■□□□□ 0.16
CLN3-229ENST00000567963 SLC30A9Q6PML9 568 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 ZNF438Q7Z4V0 828 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 ZNF605Q86T29 641 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 PIM3Q86V86 326 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 NLRP8Q86W28 1048 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 KCTD6Q8NC69 237 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 MAML1Q92585 1016 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 SCARF2Q96GP6 870 aaPredicted RBP16.03■□□□□ 0.16
CLN3-229ENST00000567963 SMIM14Q96QK8 99 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 ABCG8Q9H221 673 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 SEMA6CQ9H3T2 930 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 RDH14Q9HBH5 336 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 NENFQ9UMX5 172 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 RHPN2P1A8MT19 583 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 AGRPO00253 132 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 MAP3K6O95382 1288 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 CPNE6O95741 557 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 ZNF30P17039 623 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 ADCY8P40145 1251 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 OR1D5P58170 312 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 PEX6Q13608 980 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 PDK2Q15119 407 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 IFI16Q16666 785 aaKnown RBP16.02■□□□□ 0.15
CLN3-229ENST00000567963 KIAA1614Q5VZ46 1190 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 CPNE8Q86YQ8 564 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 NAGSQ8N159 534 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 SCAMP4Q969E2 229 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 FATE1Q969F0 183 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 AP2M1Q96CW1 435 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 TSGA13Q96PP4 275 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 ZNF670Q9BS34 389 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 HELZ2Q9BYK8 2649 aaKnown RBP16.02■□□□□ 0.15
CLN3-229ENST00000567963 RBM22Q9NW64 420 aaKnown RBP eCLIP16.02■□□□□ 0.15
CLN3-229ENST00000567963 AMACRQ9UHK6 382 aa16.02■□□□□ 0.15
CLN3-229ENST00000567963 GOLGA6L19H0YKK7 550 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 ZW10O43264 779 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 PRLP01236 227 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 CASP14P31944 242 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 GJC1P36383 396 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 ETV5P41161 510 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 EPHB1P54762 984 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 DSC2Q02487 901 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 LY6DQ14210 128 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 TGIF1Q15583 401 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 AMZ1Q400G9 498 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 MAP9Q49MG5 647 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 PHF19Q5T6S3 580 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 DOK6Q6PKX4 331 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 ADAMTSL4Q6UY14 1074 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 ZNF574Q6ZN55 896 aaPredicted RBP16.01■□□□□ 0.15
CLN3-229ENST00000567963 ZNF765Q7L2R6 523 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 MAP7D3Q8IWC1 876 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.01■□□□□ 0.15
CLN3-229ENST00000567963 ARRDC2Q8TBH0 407 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 PATE1Q8WXA2 126 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 TDRD1Q9BXT4 1180 aaKnown RBP16.01■□□□□ 0.15
CLN3-229ENST00000567963 SEMA4CQ9C0C4 833 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 WDR70Q9NW82 654 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 IFNKQ9P0W0 207 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 CTTNBP2NLQ9P2B4 639 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 CHKBQ9Y259 395 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 TMEM98Q9Y2Y6 226 aa16.01■□□□□ 0.15
CLN3-229ENST00000567963 PRAMEF33A0A0G2JMD5 474 aa16■□□□□ 0.15
CLN3-229ENST00000567963 PPM1DO15297 605 aa16■□□□□ 0.15
CLN3-229ENST00000567963 PRAMEF10O60809 474 aa16■□□□□ 0.15
CLN3-229ENST00000567963 PROSCO94903 275 aa16■□□□□ 0.15
CLN3-229ENST00000567963 PYGLP06737 847 aa16■□□□□ 0.15
CLN3-229ENST00000567963 LIPCP11150 499 aa16■□□□□ 0.15
CLN3-229ENST00000567963 PLA2G2AP14555 144 aa16■□□□□ 0.15
CLN3-229ENST00000567963 HNRNPH3P31942 346 aaKnown RBP16■□□□□ 0.15
CLN3-229ENST00000567963 GPR3P46089 330 aa16■□□□□ 0.15
CLN3-229ENST00000567963 TAS2R40P59535 323 aa16■□□□□ 0.15
CLN3-229ENST00000567963 CLPPQ16740 277 aaPredicted RBP16■□□□□ 0.15
CLN3-229ENST00000567963 USP53Q70EK8 1073 aa16■□□□□ 0.15
CLN3-229ENST00000567963 LRRN4Q8WUT4 740 aa16■□□□□ 0.15
CLN3-229ENST00000567963 USP7Q93009 1102 aa16■□□□□ 0.15
CLN3-229ENST00000567963 FAF2Q96CS3 445 aa16■□□□□ 0.15
CLN3-229ENST00000567963 AGAP2Q99490 1192 aa16■□□□□ 0.15
CLN3-229ENST00000567963 CDH19Q9H159 772 aa16■□□□□ 0.15
CLN3-229ENST00000567963 HAUS2Q9NVX0 235 aa16■□□□□ 0.15
CLN3-229ENST00000567963 UVRAGQ9P2Y5 699 aa16■□□□□ 0.15
CLN3-229ENST00000567963 PLEKHM1Q9Y4G2 1056 aa16■□□□□ 0.15
CLN3-229ENST00000567963 TTLL3Q9Y4R7 772 aa16■□□□□ 0.15
CLN3-229ENST00000567963 CLDN7O95471 211 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 KRT7P08729 469 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 H2AFZP0C0S5 128 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 CD1CP29017 333 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 ACTR1BP42025 376 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 STC1P52823 247 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 MAPK10P53779 464 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 ACTR1AP61163 376 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 NIPAL4Q0D2K0 466 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 SLC10A2Q12908 348 aaPredicted RBP15.99■□□□□ 0.15
CLN3-229ENST00000567963 BIRC2Q13490 618 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 C16orf72Q14CZ0 275 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms