RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 PPP1R12AO14974 1030 aaPredicted RBP13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 INPP4BO15327 924 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 KRT86O43790 486 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 CST8O60676 142 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 ZRANB2O95218 330 aaKnown RBP eCLIP13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 APC2O95996 2303 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 CCDC175P0C221 793 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 MYCLP1P12525 358 aaPredicted RBP13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 ZFXP17010 805 aaPredicted RBP13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 CTNNA2P26232 953 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 CTNNA1P35221 906 aaKnown RBP13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 TRIM23P36406 574 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 CDKN2BP42772 138 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 GNPDA1P46926 289 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 POLD2P49005 469 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 SKOR1P84550 965 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 ALG1LQ6GMV1 187 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 FOXR1Q6PIV2 292 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 SPOCD1Q6ZMY3 1216 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 MARK2Q7KZI7 788 aaKnown RBP13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 NT5DC3Q86UY8 548 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 SYCE1Q8N0S2 351 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 CNTD1Q8N815 330 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 DCBLD1Q8N8Z6 715 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 FAM46DQ8NEK8 389 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 PTCD2Q8WV60 388 aaKnown RBP13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 SPOCK2Q92563 424 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 CCDC74AQ96AQ1 378 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 TBATAQ96M53 351 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 AGAP2Q99490 1192 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 CCDC3Q9BQI4 270 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 BRD8Q9H0E9 1235 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 NCKIPSDQ9NZQ3 722 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 TMEM98Q9Y2Y6 226 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 PPIL1Q9Y3C6 166 aa13.6□□□□□ -0.23
VPS9D1-204ENST00000565023 C1orf232A0A0U1RR37 186 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 CCDC66A2RUB6 948 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 CAPN8A6NHC0 703 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 PSMD11O00231 422 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 PDE2AO00408 941 aaPredicted RBP13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 USP12O75317 370 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 ASMTLO95671 621 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 PRLP01236 227 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 MPOP05164 745 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 GP1BAP07359 652 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 MMP2P08253 660 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 PIRTP0C851 137 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 PECAM1P16284 738 aaPredicted RBP13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 CES1P23141 567 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 IFI35P80217 286 aaPredicted RBP13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 CDK3Q00526 305 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 PTSQ03393 145 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 QPCTQ16769 361 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 TECPR1Q7Z6L1 1165 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 ZC3H18Q86VM9 953 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 RCOR2Q8IZ40 523 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 ARL10Q8N8L6 244 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 Q8N9G6 341 aaPredicted RBP13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 EXD1Q8NHP7 514 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 NAT6Q93015 286 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 FATE1Q969F0 183 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 OLFM3Q96PB7 478 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 DPEP2Q9H4A9 486 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 UBP1Q9NZI7 540 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 AMACRQ9UHK6 382 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 RABGEF1Q9UJ41 708 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 LHX6Q9UPM6 363 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 CAPN6Q9Y6Q1 641 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 DGKBQ9Y6T7 804 aa13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 ZFC3H1O60293 1989 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 COL27A1Q8IZC6 1860 aaPredicted RBP13.59□□□□□ -0.23
VPS9D1-204ENST00000565023 UNC13CQ8NB66 2214 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 IGSF10Q6WRI0 2623 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 TLX3O43711 291 aaPredicted RBP13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 BRINP1O60477 761 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 CEACAM5P06731 702 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 ZNF30P17039 623 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 AK4P27144 223 aaPredicted RBP13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 STC1P52823 247 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 GABREP78334 506 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 ADCY2Q08462 1091 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 SPIDRQ14159 915 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 TFDP2Q14188 446 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 COL28A1Q2UY09 1125 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 TFDP3Q5H9I0 405 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 C3orf38Q5JPI3 329 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 CCDC181Q5TID7 509 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 CDCP2Q5VXM1 449 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 PEX26Q7Z412 305 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 CBARPQ8N350 705 aaPredicted RBP13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 SDR16C5Q8N3Y7 309 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 SPATA22Q8NHS9 363 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 UBE2Q2Q8WVN8 375 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 RBM41Q96IZ5 413 aaKnown RBP13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 MLPHQ9BV36 600 aaPredicted RBP13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 RIOK2Q9BVS4 552 aaKnown RBP13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 HEMGNQ9BXL5 484 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 TEX101Q9BY14 249 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 NRSN2Q9GZP1 204 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 KCTD5Q9NXV2 234 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms