RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 RHPN2P1A8MT19 583 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 B8ZZF3 427 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 MYO1FO00160 1098 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 PRAMEF10O60809 474 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 SERPING1P05155 500 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 IVLP07476 585 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 LIPCP11150 499 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 CD1CP29017 333 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 GPR1P46091 355 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 MAPK10P53779 464 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 FANCCQ00597 558 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 ITKQ08881 620 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 KRT81Q14533 505 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 NR1D2Q14995 579 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 CCDC122Q5T0U0 273 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 SLC30A9Q6PML9 568 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 NLRP8Q86W28 1048 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 ZFAND4Q86XD8 727 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 CPLX3Q8WVH0 158 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 SCAMP4Q969E2 229 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 NUDT22Q9BRQ3 303 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 FOXJ2Q9P0K8 574 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 CD84Q9UIB8 345 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 TMEM98Q9Y2Y6 226 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 PLEKHM1Q9Y4G2 1056 aa15.69■□□□□ 0.1
CLK3-211ENST00000563297 A0A0J9YYE9 177 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 C9orf172C9J069 976 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 PPM1DO15297 605 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 TRBC1P01850 177 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 GARSP41250 739 aaKnown RBP15.68■□□□□ 0.1
CLK3-211ENST00000563297 SSR1P43307 286 aaKnown RBP15.68■□□□□ 0.1
CLK3-211ENST00000563297 GPR3P46089 330 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 ZBED6P86452 979 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 GALNT2Q10471 571 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 DPYSL3Q14195 570 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 PAFAH1B3Q15102 231 aaKnown RBP15.68■□□□□ 0.1
CLK3-211ENST00000563297 NFKBIBQ15653 356 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 CLPPQ16740 277 aaPredicted RBP15.68■□□□□ 0.1
CLK3-211ENST00000563297 HADHQ16836 314 aaKnown RBP15.68■□□□□ 0.1
CLK3-211ENST00000563297 MAP9Q49MG5 647 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 LRRC66Q68CR7 880 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 ALG1LQ6GMV1 187 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 ALKBH5Q6P6C2 394 aaKnown RBP15.68■□□□□ 0.1
CLK3-211ENST00000563297 ADAMTSL4Q6UY14 1074 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 DTX1Q86Y01 620 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 CPNE8Q86YQ8 564 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 NDUFAF2Q8N183 169 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 MAML1Q92585 1016 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 AP2M1Q96CW1 435 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 POLR1EQ9GZS1 481 aaKnown RBP15.68■□□□□ 0.1
CLK3-211ENST00000563297 CBX8Q9HC52 389 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 CAPN11Q9UMQ6 739 aa15.68■□□□□ 0.1
CLK3-211ENST00000563297 IGHV5-10-1A0A0J9YXX1 117 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 J3QKU1 62 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 MATN3O15232 486 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 ZW10O43264 779 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 MFSD11O43934 449 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 MAP3K6O95382 1288 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 PRLP01236 227 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 CCL4P13236 92 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 KRT10P13645 584 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 ZNF30P17039 623 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 CES1P23141 567 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 CCNCP24863 283 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 UBASH3AP57075 661 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 DSC2Q02487 901 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 PEX6Q13608 980 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 LINC00303Q3SY05 128 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 PYCR3Q53H96 274 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 NCBP2-AS2Q69YL0 99 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 DOK6Q6PKX4 331 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 LUZP1Q86V48 1076 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.67■□□□□ 0.1
CLK3-211ENST00000563297 EXD3Q8N9H8 876 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 RCBTB1Q8NDN9 531 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 SGF29Q96ES7 293 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 TSGA13Q96PP4 275 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 AGAP2Q99490 1192 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 B3GNT4Q9C0J1 378 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 RBM22Q9NW64 420 aaKnown RBP eCLIP15.67■□□□□ 0.19e-10■□□□□ 8.1
CLK3-211ENST00000563297 SEPT10Q9P0V9 454 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 CHKBQ9Y259 395 aa15.67■□□□□ 0.1
CLK3-211ENST00000563297 SETXQ7Z333 2677 aaKnown RBP15.67■□□□□ 0.1
CLK3-211ENST00000563297 SDK2Q58EX2 2172 aa15.66■□□□□ 0.1
CLK3-211ENST00000563297 ACTR1BP42025 376 aa15.66■□□□□ 0.1
CLK3-211ENST00000563297 STC1P52823 247 aa15.66■□□□□ 0.1
CLK3-211ENST00000563297 LIMK2P53671 638 aa15.66■□□□□ 0.1
CLK3-211ENST00000563297 EPHB1P54762 984 aa15.66■□□□□ 0.1
CLK3-211ENST00000563297 ACTR1AP61163 376 aa15.66■□□□□ 0.1
CLK3-211ENST00000563297 BIRC2Q13490 618 aa15.66■□□□□ 0.1
CLK3-211ENST00000563297 SQSTM1Q13501 440 aa15.66■□□□□ 0.1
CLK3-211ENST00000563297 IFI16Q16666 785 aaKnown RBP15.66■□□□□ 0.1
CLK3-211ENST00000563297 ANKRD20A8PQ5CZ79 823 aa15.66■□□□□ 0.1
CLK3-211ENST00000563297 MANEAQ5SRI9 462 aa15.66■□□□□ 0.1
CLK3-211ENST00000563297 NKAIN2Q5VXU1 208 aa15.66■□□□□ 0.1
CLK3-211ENST00000563297 TIGD7Q6NT04 549 aaPredicted RBP15.66■□□□□ 0.1
CLK3-211ENST00000563297 ZNF765Q7L2R6 523 aa15.66■□□□□ 0.1
CLK3-211ENST00000563297 TRIM74Q86UV6 250 aa15.66■□□□□ 0.1
CLK3-211ENST00000563297 KCTD6Q8NC69 237 aa15.66■□□□□ 0.1
CLK3-211ENST00000563297 ARRDC2Q8TBH0 407 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms