RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 BEND5Q7L4P6 421 aa13.19□□□□□ -0.3
CSPG4P11-201ENST00000560634 DET1Q7L5Y6 550 aa13.19□□□□□ -0.3
CSPG4P11-201ENST00000560634 STX12Q86Y82 276 aa13.19□□□□□ -0.3
CSPG4P11-201ENST00000560634 PGAM4Q8N0Y7 254 aa13.19□□□□□ -0.3
CSPG4P11-201ENST00000560634 TMEM109Q9BVC6 243 aa13.19□□□□□ -0.3
CSPG4P11-201ENST00000560634 PDGFDQ9GZP0 370 aaPredicted RBP13.19□□□□□ -0.3
CSPG4P11-201ENST00000560634 ASAH2Q9NR71 780 aa13.19□□□□□ -0.3
CSPG4P11-201ENST00000560634 STOML2Q9UJZ1 356 aa13.19□□□□□ -0.3
CSPG4P11-201ENST00000560634 DERAQ9Y315 318 aa13.19□□□□□ -0.3
CSPG4P11-201ENST00000560634 PSMD11O00231 422 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 MEIS2O14770 477 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 TBL1XO60907 577 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 LYPLA2O95372 231 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 TAL1P17542 331 aaPredicted RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 MC4RP32245 332 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 SDC2P34741 201 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 GRM5P41594 1212 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 MANFP55145 182 aaKnown RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 TAS2R41P59536 307 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 ABRQ12979 859 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 SERPINA13PQ6UXR4 307 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 CERS6Q6ZMG9 384 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 TAF8Q7Z7C8 310 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 CMC1Q7Z7K0 106 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 NOL11Q9H8H0 719 aaKnown RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 HMX1Q9NP08 348 aaPredicted RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 BPIFA1Q9NP55 256 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 SLC17A7Q9P2U7 560 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 MRTO4Q9UKD2 239 aaKnown RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 RAB23Q9ULC3 237 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 RBM7Q9Y580 266 aaKnown RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 CPS1P31327 1500 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 A0A0X1KG70 313 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 ISM1B1AKI9 464 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 MSCO60682 206 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 BANF1O75531 89 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 GPIP06744 558 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 ASGR1P07306 291 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 VEGFAP15692 232 aaPredicted RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 TOMM20Q15388 145 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 TEX44Q53QW1 395 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 DACT2Q5SW24 774 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 CAPN13Q6MZZ7 669 aaPredicted RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 BTN2A1Q7KYR7 527 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 CHST15Q7LFX5 561 aaPredicted RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 RAB43Q86YS6 212 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 NXF3Q9H4D5 531 aaKnown RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 INTS7Q9NVH2 962 aaKnown RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 DNAJC28Q9NX36 388 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 ASF1AQ9Y294 204 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 POLR3HQ9Y535 204 aaPredicted RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 PTPRMP28827 1452 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 MAGEB3O15480 346 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 TIPRLO75663 272 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 PKMP14618 531 aaKnown RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 MMP8P22894 467 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 PRDX6P30041 224 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 SMARCB1Q12824 385 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 MYBPC3Q14896 1274 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 LIN52Q52LA3 116 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 MTX3Q5HYI7 312 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 DCLRE1AQ6PJP8 1040 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 RTL4Q6ZR62 310 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 DENND1CQ8IV53 801 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 OR5B17Q8NGF7 314 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 FAR1Q8WVX9 515 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 NKD2Q969F2 451 aaPredicted RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 NPAS2Q99743 824 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 NMUR2Q9GZQ4 415 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 ROBO3Q96MS0 1386 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 IFNA6P05013 189 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 HNF4AP41235 474 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 BNIP1Q12981 228 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 C17orf64Q86WR6 236 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 GJD3Q8N144 294 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 FCRL2Q96LA5 508 aaPredicted RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 ZNF354BQ96LW1 612 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 MECRQ9BV79 373 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 SSU72Q9NP77 194 aaKnown RBP13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 KCTD5Q9NXV2 234 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 ZNF510Q9Y2H8 683 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 PCDHB9Q9Y5E1 797 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 RIMBP3CA6NJZ7 1639 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 RIMBP3BA6NNM3 1639 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 RIMBP3Q9UFD9 1639 aa13.18□□□□□ -0.3
CSPG4P11-201ENST00000560634 OR6C75A6NL08 312 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 ZNF879B4DU55 563 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 TRMUO75648 421 aaKnown RBP13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 CCNKO75909 580 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 CCNDBP1O95273 360 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 TRBC1P01850 177 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 S100A6P06703 90 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 HTR7P34969 479 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 CBX5P45973 191 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 MBTD1Q05BQ5 628 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 NOMO2Q5JPE7 1267 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 ZNF697Q5TEC3 545 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 FAM35AQ86V20 835 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 SRFBP1Q8NEF9 429 aaKnown RBP13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 OR4A15Q8NGL6 344 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms