RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TMEM221A6NGB7 291 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 NDUFB5O43674 189 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 ITGB6P18564 788 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 ICAM3P32942 547 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 TAF6P49848 677 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 PFKPQ01813 784 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 GHRHRQ02643 423 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 SOX4Q06945 474 aaPredicted RBP11.31□□□□□ -0.6
LDLR-208ENST00000558518 PKDCCQ504Y2 493 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 PAGE3Q5JUK9 113 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 BROXQ5VW32 411 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 TANKQ92844 425 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 FEM1AQ9BSK4 669 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 SIAEQ9HAT2 523 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.31□□□□□ -0.6
LDLR-208ENST00000558518 VWA7Q9Y334 891 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 H3BRB1 525 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 CNOT3O75175 753 aaKnown RBP11.31□□□□□ -0.6
LDLR-208ENST00000558518 GJB3O75712 270 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 INMTO95050 263 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 PRDX3P30048 256 aaKnown RBP11.31□□□□□ -0.6
LDLR-208ENST00000558518 IDUAP35475 653 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 TGFBR1P36897 503 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 CDKN2DP55273 166 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 WNT3AP56704 352 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 OR4D2P58180 307 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 RFTN1Q14699 578 aaPredicted RBP11.31□□□□□ -0.6
LDLR-208ENST00000558518 GLYATQ6IB77 296 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 TMEM126BQ8IUX1 230 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 SCN4BQ8IWT1 228 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 TBATAQ96M53 351 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 DACH2Q96NX9 599 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 MYOCQ99972 504 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 ATAD3AQ9NVI7 634 aa11.31□□□□□ -0.6
LDLR-208ENST00000558518 MARCH4Q9P2E8 410 aaPredicted RBP11.31□□□□□ -0.6
LDLR-208ENST00000558518 GPC6Q9Y625 555 aaPredicted RBP11.31□□□□□ -0.6
LDLR-208ENST00000558518 A0A0U1RQS6 177 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 CASTOR2A6NHX0 329 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 AZIN1O14977 448 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 CNTN5O94779 1100 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 MYF6P23409 242 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 SLC6A2P23975 617 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 INAQ16352 499 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 SDHAF4Q5VUM1 108 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 LINC00523Q86TU6 105 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 CLIP4Q8N3C7 705 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 TRPV3Q8NET8 790 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 ITFG1Q8TB96 612 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 TMBIM1Q969X1 311 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 DNAI2Q9GZS0 605 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 TXNRD2Q9NNW7 524 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 IPO11Q9UI26 975 aaKnown RBP11.3□□□□□ -0.6
LDLR-208ENST00000558518 VPS28Q9UK41 221 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 ASB14A6NK59 587 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 C19orf81C9J6K1 198 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 KPNA4O00629 521 aaPredicted RBP11.3□□□□□ -0.6
LDLR-208ENST00000558518 DLGAP1O14490 977 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 CLPXO76031 633 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 MYO1DO94832 1006 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 HLA-DQB2P05538 268 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 ZNF12P17014 697 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 FMO3P31513 532 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 MTHFRP42898 656 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 ARSDP51689 593 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 MOGQ16653 247 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 SLC36A3Q495N2 470 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 CYBRD1Q53TN4 286 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 CLEC20AQ6ZU45 233 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 ADGRG5Q8IZF4 528 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 ANKFN1Q8N957 763 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 ABHD11Q8NFV4 315 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 CLHC1Q8NHS4 586 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 CDC26Q8NHZ8 85 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 ZFP90Q8TF47 636 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 CENPIQ92674 756 aaPredicted RBP11.3□□□□□ -0.6
LDLR-208ENST00000558518 BIRC7Q96CA5 298 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 GPR78Q96P69 363 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 C6orf62Q9GZU0 229 aaPredicted RBP11.3□□□□□ -0.6
LDLR-208ENST00000558518 ZNF385DQ9H6B1 395 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 RASSF1Q9NS23 344 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 TBCCD1Q9NVR7 557 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 ZMYM5Q9UJ78 669 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 RNF112Q9ULX5 631 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 AAR2Q9Y312 384 aaKnown RBP11.3□□□□□ -0.6
LDLR-208ENST00000558518 SMIM28A0A1B0GU29 152 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 TBC1D4O60343 1298 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 NPHS1O60500 1241 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 FTH1P02794 183 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 RBP1P09455 135 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 BMP2P12643 396 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 LBPP18428 481 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 FMO4P31512 558 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 MAP2K4P45985 399 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 AGTR2P50052 363 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 PLA2G16P53816 162 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 TRAP1Q12931 704 aaKnown RBP11.3□□□□□ -0.6
LDLR-208ENST00000558518 ATP6AP1LQ52LC2 224 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 TECRLQ5HYJ1 363 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 CCNYL2Q5T2Q4 361 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 OTUD1Q5VV17 481 aaPredicted RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms