RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 HACD3Q9P035 362 aa12.45□□□□□ -0.42
SLIRP-209ENST00000557342 DOLKQ9UPQ8 538 aa12.45□□□□□ -0.42
SLIRP-209ENST00000557342 PCDHGA1Q9Y5H4 931 aa12.45□□□□□ -0.42
SLIRP-209ENST00000557342 ZFC3H1O60293 1989 aaKnown RBP12.45□□□□□ -0.42
SLIRP-209ENST00000557342 TCRBV7S2A1N4TA0A589 114 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 TMEM202A6NGA9 273 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 F5H423 210 aaPredicted RBP12.44□□□□□ -0.42
SLIRP-209ENST00000557342 TRIM38O00635 465 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 SIGLEC6O43699 453 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 GCATO75600 419 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 ANXA6P08133 673 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 ATXN1LP0C7T5 689 aaKnown RBP12.44□□□□□ -0.42
SLIRP-209ENST00000557342 CKMT2P17540 419 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 PSMB4P28070 264 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 DUSP3P51452 185 aaPredicted RBP12.44□□□□□ -0.42
SLIRP-209ENST00000557342 DAB2P98082 770 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 FOXC1Q12948 553 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 PARP6Q2NL67 630 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 P3H1Q32P28 736 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 PROX2Q3B8N5 592 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 SIRPB2Q5JXA9 342 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 ZCCHC8Q6NZY4 707 aaKnown RBP12.44□□□□□ -0.42
SLIRP-209ENST00000557342 LVRNQ6Q4G3 990 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 RFLNAQ6ZTI6 216 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 RD3Q7Z3Z2 195 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 PELI3Q8N2H9 469 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 SLC25A41Q8N5S1 370 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 FAM71DQ8N9W8 422 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 FAM181AQ8N9Y4 354 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 SCG3Q8WXD2 468 aaKnown RBP12.44□□□□□ -0.42
SLIRP-209ENST00000557342 ADAMTS14Q8WXS8 1223 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 GLMNQ92990 594 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 SCAMP4Q969E2 229 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 HIC2Q96JB3 615 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 TMEM121Q9BTD3 319 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 LRRC61Q9BV99 259 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 RIOK2Q9BVS4 552 aaKnown RBP12.44□□□□□ -0.42
SLIRP-209ENST00000557342 LGR4Q9BXB1 951 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 TLR10Q9BXR5 811 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 TCEAL2Q9H3H9 227 aaPredicted RBP12.44□□□□□ -0.42
SLIRP-209ENST00000557342 KCNF1Q9H3M0 494 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 NCKIPSDQ9NZQ3 722 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 NFKBIL1Q9UBC1 381 aaPredicted RBP12.44□□□□□ -0.42
SLIRP-209ENST00000557342 MOSPD1Q9UJG1 213 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 ANGPTL2Q9UKU9 493 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 PNMA8BQ9ULN7 279 aaPredicted RBP12.44□□□□□ -0.42
SLIRP-209ENST00000557342 SHOC2Q9UQ13 582 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 R3HDM2Q9Y2K5 976 aaKnown RBP12.44□□□□□ -0.42
SLIRP-209ENST00000557342 ZKSCAN5Q9Y2L8 839 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 JRKLQ9Y4A0 524 aa12.44□□□□□ -0.42
SLIRP-209ENST00000557342 ZNF106Q9H2Y7 1883 aaKnown RBP12.44□□□□□ -0.42
SLIRP-209ENST00000557342 PRSS38A1L453 326 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 LMO7DNF2Z398 122 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 PSMD3O43242 534 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 LIASO43766 372 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 DKK1O94907 266 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 PIRTP0C851 137 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 GIMD1P0DJR0 217 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 ACP1P24666 158 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 ACTN2P35609 894 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 DCDC1P59894 354 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 SHC2P98077 582 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 ILKQ13418 452 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 C1orf61Q13536 156 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 HENMT1Q5T8I9 393 aaKnown RBP12.43□□□□□ -0.42
SLIRP-209ENST00000557342 ZDHHC20Q5W0Z9 365 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 PDPK2PQ6A1A2 396 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 RAB44Q7Z6P3 723 aaPredicted RBP12.43□□□□□ -0.42
SLIRP-209ENST00000557342 SLCO6A1Q86UG4 719 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 GKN2Q86XP6 184 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 REXO1L1PQ8IX06 675 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 OR1E3Q8WZA6 343 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 PDXPQ96GD0 296 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 APOLD1Q96LR9 279 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 FICDQ9BVA6 458 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 FRMD8Q9BZ67 464 aaPredicted RBP12.43□□□□□ -0.42
SLIRP-209ENST00000557342 CYP4F12Q9HCS2 524 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 FGF22Q9HCT0 170 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 TOR4AQ9NXH8 423 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.43□□□□□ -0.42
SLIRP-209ENST00000557342 FEZ2Q9UHY8 353 aaPredicted RBP12.43□□□□□ -0.42
SLIRP-209ENST00000557342 ZNF148Q9UQR1 794 aa12.43□□□□□ -0.42
SLIRP-209ENST00000557342 KIF5CO60282 957 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 CEP104O60308 925 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 RFPL3O75679 317 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 SOD1P00441 154 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 AGTP01019 485 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 SLC4A1P02730 911 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 CEACAM5P06731 702 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 IVLP07476 585 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 ADRA1AP35348 466 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 HMGCLP35914 325 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 CHRNA4P43681 627 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 RPIAP49247 311 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 ACADVLP49748 655 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 DNAJC3Q13217 504 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 OASLQ15646 514 aaKnown RBP12.42□□□□□ -0.42
SLIRP-209ENST00000557342 CCNG2Q16589 344 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 DEFB133Q30KQ1 61 aa12.42□□□□□ -0.42
SLIRP-209ENST00000557342 ZNF569Q5MCW4 686 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms