RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 STX7O15400 261 aaKnown RBP12.77□□□□□ -0.37
SHMT2-227ENST00000557269 GPR39O43194 453 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 PSMA3P25788 255 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 ECHS1P30084 290 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 AKT2P31751 481 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 NBL1P41271 181 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 CARSP49589 748 aaKnown RBP12.77□□□□□ -0.37
SHMT2-227ENST00000557269 XIAPP98170 497 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 DPTQ07507 201 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 INPP5AQ14642 412 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 FASTKD3Q14CZ7 662 aaKnown RBP12.77□□□□□ -0.37
SHMT2-227ENST00000557269 CHRNA6Q15825 494 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 CCDC6Q16204 474 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 BBS9Q3SYG4 887 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 TPRG1LQ5T0D9 272 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 TSTD2Q5T7W7 516 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 HENMT1Q5T8I9 393 aaKnown RBP12.77□□□□□ -0.37
SHMT2-227ENST00000557269 ESRP1Q6NXG1 681 aaKnown RBP12.77□□□□□ -0.37
SHMT2-227ENST00000557269 PNCKQ6P2M8 343 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 ZNF765Q7L2R6 523 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 PPHLN1Q8NEY8 458 aaKnown RBP12.77□□□□□ -0.37
SHMT2-227ENST00000557269 OR13J1Q8NGT2 312 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 IFT81Q8WYA0 676 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 AP2M1Q96CW1 435 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 FCRL3Q96P31 734 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-227ENST00000557269 KIFC1Q9BW19 673 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 CAAP1Q9H8G2 361 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 PLAC1Q9HBJ0 212 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 TREX1Q9NSU2 369 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.77□□□□□ -0.37
SHMT2-227ENST00000557269 TMPRSS11EQ9UL52 423 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 SOX13Q9UN79 622 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 PKP3Q9Y446 797 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 OR1A2Q9Y585 309 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 V9GYY5 206 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-227ENST00000557269 USP34Q70CQ2 3546 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 RGSL1A5PLK6 1076 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 OR51F1A6NGY5 319 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 PATE3B3GLJ2 98 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 SMAPO00193 183 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 UGT1A9O60656 530 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 PPFIA2O75334 1257 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 EPN2O95208 641 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 PRSS56P0CW18 603 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 UGT1A6P19224 532 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 UGT1A1P22309 533 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 UGT1A4P22310 534 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 UGT1A3P35503 534 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 UGT1A5P35504 534 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 NUDT1P36639 197 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 CSNK1EP49674 416 aaKnown RBP12.76□□□□□ -0.37
SHMT2-227ENST00000557269 DCDC1P59894 354 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 PFN3P60673 137 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 RACK1P63244 317 aaKnown RBP12.76□□□□□ -0.37
SHMT2-227ENST00000557269 ACVR1Q04771 509 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 PEX6Q13608 980 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 STAT4Q14765 748 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 HIF1AQ16665 826 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 PEAR1Q5VY43 1037 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-227ENST00000557269 FAM151BQ6UXP7 276 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 Q6ZSR6 202 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 ABI3BPQ7Z7G0 1075 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 SYT12Q8IV01 421 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 RAVER1Q8IY67 606 aaKnown RBP12.76□□□□□ -0.37
SHMT2-227ENST00000557269 PDIK1LQ8N165 341 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 PNPLA1Q8N8W4 532 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 DENND6BQ8NEG7 585 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 OR13H1Q8NG92 308 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 STYXQ8WUJ0 223 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 MFSD3Q96ES6 412 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 CDKN2AIPNLQ96HQ2 116 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 TBATAQ96M53 351 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 LGR4Q9BXB1 951 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 C1QTNF7Q9BXJ2 289 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 IRF2BPLQ9H1B7 796 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 ARRDC1-AS1Q9H2J1 176 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 SMOC1Q9H4F8 434 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 FAM96AQ9H5X1 160 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 ANKZF1Q9H8Y5 726 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 UGT1A7Q9HAW7 530 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 UGT1A10Q9HAW8 530 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 UGT1A8Q9HAW9 530 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 FSCN3Q9NQT6 498 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 AASDHPPTQ9NRN7 309 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 FAM114A2Q9NRY5 505 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 CNOT6Q9ULM6 557 aaKnown RBP12.76□□□□□ -0.37
SHMT2-227ENST00000557269 HCN4Q9Y3Q4 1203 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 HS3ST3A1Q9Y663 406 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 MAD1L1Q9Y6D9 718 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 TEX264Q9Y6I9 313 aa12.76□□□□□ -0.37
SHMT2-227ENST00000557269 GLYATL1P3A0A0U1RQE8 302 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 CCDC162PA2VCL2 907 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 E7ESA3 106 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 FPGTO14772 594 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 BCAT2O15382 392 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-227ENST00000557269 CACNA1HO95180 2353 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 ARNTP27540 789 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 CD38P28907 300 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 TRIM23P36406 574 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 SPAM1P38567 509 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms