RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 DGKBQ9Y6T7 804 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 SCN8AQ9UQD0 1980 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 MAP1BP46821 2468 aaKnown RBP13.67□□□□□ -0.22
SHMT2-219ENST00000555563 TCRBV7S2A1N4TA0A589 114 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 PRSS38A1L453 326 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 TNFRSF10CO14798 259 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 KCNN4O15554 427 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 NRDCO43847 1150 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 TNFP01375 233 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 ANXA6P08133 673 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 CKMT1AP12532 417 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 CTSEP14091 401 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 CHRNA4P43681 627 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 GPR1P46091 355 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 SPINT3P49223 89 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 CLDN6P56747 220 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 ILKQ13418 452 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 SMAD1Q15797 465 aaKnown RBP13.67□□□□□ -0.22
SHMT2-219ENST00000555563 ADAMTSL4Q6UY14 1074 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 TRIM74Q86UV6 250 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 RAVER1Q8IY67 606 aaKnown RBP13.67□□□□□ -0.22
SHMT2-219ENST00000555563 NRSN1Q8IZ57 195 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 IPMKQ8NFU5 416 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 CCHCR1Q8TD31 782 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 EID2BQ96D98 161 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 MRGPRX2Q96LB1 330 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 WDR24Q96S15 920 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 AGAP2Q99490 1192 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 FERMT1Q9BQL6 677 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 RIOK2Q9BVS4 552 aaKnown RBP13.67□□□□□ -0.22
SHMT2-219ENST00000555563 TMEM121BQ9BXQ6 578 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-219ENST00000555563 FRMD8Q9BZ67 464 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-219ENST00000555563 ZFYVE1Q9HBF4 777 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 MAGEE1Q9HCI5 957 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 CYP4F12Q9HCS2 524 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 PKD2L2Q9NZM6 624 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 SHOC2Q9UQ13 582 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 R3HDM2Q9Y2K5 976 aaKnown RBP13.67□□□□□ -0.22
SHMT2-219ENST00000555563 MSRB2Q9Y3D2 182 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 SPO11Q9Y5K1 396 aa13.67□□□□□ -0.22
SHMT2-219ENST00000555563 LOC285095A0A1B0GVY8 99 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 FAM221BA6H8Z2 402 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 GOLGA6L9A6NEM1 432 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 PDE2AO00408 941 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-219ENST00000555563 YY2O15391 372 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 CEACAM5P06731 702 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 MPP3Q13368 585 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 ELOCQ15369 112 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 SIRPB2Q5JXA9 342 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 ANKRD20A2Q5SQ80 823 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 C6orf132Q5T0Z8 1188 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 HENMT1Q5T8I9 393 aaKnown RBP13.66□□□□□ -0.22
SHMT2-219ENST00000555563 SEL1L2Q5TEA6 688 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 ANKRD20A1Q5TYW2 823 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 ANKRD20A3Q5VUR7 823 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 ITPRIPL1Q6GPH6 555 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 CCDC70Q6NSX1 233 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 DOK6Q6PKX4 331 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 TMPRSS7Q7RTY8 843 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 MARCH9Q86YJ5 346 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 TTC13Q8NBP0 860 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 CCDC110Q8TBZ0 833 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 PTCD2Q8WV60 388 aaKnown RBP13.66□□□□□ -0.22
SHMT2-219ENST00000555563 GATA6Q92908 595 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 SPATA13Q96N96 652 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 ALS2CR12Q96Q35 445 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 BOCQ9BWV1 1114 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 FSD1LQ9BXM9 530 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 SUDS3Q9H7L9 328 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-219ENST00000555563 USP29Q9HBJ7 922 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 MOSPD1Q9UJG1 213 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 DOLKQ9UPQ8 538 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 PPP2R2CQ9Y2T4 447 aa13.66□□□□□ -0.22
SHMT2-219ENST00000555563 FAM149AA5PLN7 773 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 FADS2P1A8MWK0 482 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 C1QTNF9BB2RNN3 333 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 AURKAO14965 403 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 INPP4BO15327 924 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 STK10O94804 968 aaKnown RBP13.65□□□□□ -0.22
SHMT2-219ENST00000555563 EPOP01588 193 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 FUCA1P04066 466 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 PYGLP06737 847 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 C1QTNF9P0C862 333 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 ATXN8OSP0DMR3 200 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 CDK4P11802 303 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 PSMB4P28070 264 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 DCDC1P59894 354 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 SLC1A5Q15758 541 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 HES3Q5TGS1 186 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 MEI1Q5TIA1 1274 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 ALS2CLQ60I27 953 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 GUSBP11Q6P575 273 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 UNQ6494/PRO21346Q6UXR6 183 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 CCNI2Q6ZMN8 369 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-219ENST00000555563 NLRP8Q86W28 1048 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 SLC35F3Q8IY50 421 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 GALNT15Q8N3T1 639 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 SLC25A41Q8N5S1 370 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 KYQ8NBH2 561 aa13.65□□□□□ -0.22
SHMT2-219ENST00000555563 CCL4L1Q8NHW4 92 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms