RNA–Protein interactions for RNA: ENST00000555323.1

SYNE2-219, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 389 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-219ENST00000555323 GDF3Q9NR23 364 aa12.64□□□□□ -0.39
SYNE2-219ENST00000555323 CHRAC1Q9NRG0 131 aa12.64□□□□□ -0.39
SYNE2-219ENST00000555323 FAM114A2Q9NRY5 505 aa12.64□□□□□ -0.39
SYNE2-219ENST00000555323 GPR27Q9NS67 375 aa12.64□□□□□ -0.39
SYNE2-219ENST00000555323 TREX1Q9NSU2 369 aa12.64□□□□□ -0.39
SYNE2-219ENST00000555323 NLE1Q9NVX2 485 aaPredicted RBP12.64□□□□□ -0.39
SYNE2-219ENST00000555323 SUSD2Q9UGT4 822 aa12.64□□□□□ -0.39
SYNE2-219ENST00000555323 SOX13Q9UN79 622 aa12.64□□□□□ -0.39
SYNE2-219ENST00000555323 SMG5Q9UPR3 1016 aaKnown RBP12.64□□□□□ -0.39
SYNE2-219ENST00000555323 TCAF1Q9Y4C2 921 aa12.64□□□□□ -0.39
SYNE2-219ENST00000555323 KCTD3Q9Y597 815 aa12.64□□□□□ -0.39
SYNE2-219ENST00000555323 SLCO1B1Q9Y6L6 691 aa12.64□□□□□ -0.39
SYNE2-219ENST00000555323 THADAQ6YHU6 1953 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 A0A1B0GTW7 788 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 FAM237BA0A1B0GVD1 139 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 POM121BA6NF01 834 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 AGAP14A8MT82 685 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 FPGTO14772 594 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 VILLO15195 856 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 SLU7O95391 586 aaKnown RBP12.63□□□□□ -0.39
SYNE2-219ENST00000555323 SOD1P00441 154 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 LMNAP02545 664 aaKnown RBP12.63□□□□□ -0.39
SYNE2-219ENST00000555323 RETP07949 1114 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 TSHRP16473 764 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 CD38P28907 300 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 IGFALSP35858 605 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 YPEL5P62699 121 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 XIAPP98170 497 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 MTM1Q13496 603 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 PTPRCAPQ14761 206 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 IRF4Q15306 451 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 PLA2G2CQ5R387 149 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 PDPK2PQ6A1A2 396 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 SLC23A3Q6PIS1 610 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 KYAT3Q6YP21 454 aaKnown RBP12.63□□□□□ -0.39
SYNE2-219ENST00000555323 RABEPKQ7Z6M1 372 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 DCP2Q8IU60 420 aaKnown RBP12.63□□□□□ -0.39
SYNE2-219ENST00000555323 PDIK1LQ8N165 341 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 MPP5Q8N3R9 675 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 ZCCHC9Q8N567 271 aaKnown RBP12.63□□□□□ -0.39
SYNE2-219ENST00000555323 TRAM1L1Q8N609 369 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 PPHLN1Q8NEY8 458 aaKnown RBP12.63□□□□□ -0.39
SYNE2-219ENST00000555323 OR13C4Q8NGS5 318 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 OR13J1Q8NGT2 312 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 CEP76Q8TAP6 659 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 FBXO25Q8TCJ0 367 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 SNX19Q92543 992 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 ZNF778Q96MU6 729 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 SLC6A18Q96N87 628 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 HINFPQ9BQA5 517 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 NAT9Q9BTE0 207 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 ZSCAN5AQ9BUG6 496 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 RIOK2Q9BVS4 552 aaKnown RBP12.63□□□□□ -0.39
SYNE2-219ENST00000555323 TEX101Q9BY14 249 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 BPIFA1Q9NP55 256 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 FZD3Q9NPG1 666 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 ZDHHC18Q9NUE0 388 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 SYBUQ9NX95 663 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 CD84Q9UIB8 345 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 APPL1Q9UKG1 709 aa12.63□□□□□ -0.39
SYNE2-219ENST00000555323 GON4LQ3T8J9 2241 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 DOCK9Q9BZ29 2069 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 K7ESM1 405 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 GAPDHSO14556 408 aaPredicted RBP12.62□□□□□ -0.39
SYNE2-219ENST00000555323 EIF3HO15372 352 aaKnown RBP eCLIP12.62□□□□□ -0.39
SYNE2-219ENST00000555323 BUD23O43709 281 aaKnown RBP12.62□□□□□ -0.39
SYNE2-219ENST00000555323 MAGEC1O60732 1142 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 WNT1P04628 370 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 SPAM1P38567 509 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 RABIFP47224 123 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 AFF3P51826 1226 aaKnown RBP12.62□□□□□ -0.39
SYNE2-219ENST00000555323 PLTPP55058 493 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 ARL4CP56559 192 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 CLDN2P57739 230 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 CRADDP78560 199 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 DHX9Q08211 1270 aaKnown RBP12.62□□□□□ -0.39
SYNE2-219ENST00000555323 PEX6Q13608 980 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 INPP5AQ14642 412 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 LPAL2Q16609 132 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 HIF1AQ16665 826 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 DUOXA1Q1HG43 343 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 MSS51Q4VC12 460 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 CCDC38Q502W7 563 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 DNAJC21Q5F1R6 531 aaKnown RBP12.62□□□□□ -0.39
SYNE2-219ENST00000555323 ADAMTSL4Q6UY14 1074 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 CCNJLQ8IV13 435 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 PELI3Q8N2H9 469 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 EIF1ADQ8N9N8 165 aaKnown RBP12.62□□□□□ -0.39
SYNE2-219ENST00000555323 PLA2G15Q8NCC3 412 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 PIGKQ92643 395 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 DNAJC1Q96KC8 554 aaKnown RBP12.62□□□□□ -0.39
SYNE2-219ENST00000555323 TBATAQ96M53 351 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 VPS35Q96QK1 796 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 AGAP2Q99490 1192 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 EBNA1BP2Q99848 306 aaKnown RBP12.62□□□□□ -0.39
SYNE2-219ENST00000555323 APOOQ9BUR5 198 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 MIR1-1HGQ9H1L0 117 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 FAM86C1Q9NVL1 165 aa12.62□□□□□ -0.39
SYNE2-219ENST00000555323 CNOT6Q9ULM6 557 aaKnown RBP12.62□□□□□ -0.39
SYNE2-219ENST00000555323 TEX264Q9Y6I9 313 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms