RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CEP44Q9C0F1 390 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 COG4Q9H9E3 785 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 BPIFA1Q9NP55 256 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 TAS2R13Q9NYV9 303 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 ARMCX1Q9P291 453 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 SLC25A13Q9UJS0 675 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 COMMD10Q9Y6G5 202 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 A0A0J9YYE9 177 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 A8MT66 165 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 MATN2O00339 956 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 IPO13O94829 963 aaKnown RBP26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 PRAMEF12O95522 483 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 TRBC1P01850 177 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 ESRRAP11474 423 aaPredicted RBP26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 CD1DP15813 335 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 ZNF37AP17032 561 aaPredicted RBP26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 CTPS1P17812 591 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 SERPINA4P29622 427 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 FMO4P31512 558 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 ALDH18A1P54886 795 aaKnown RBP26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 NTHL1P78549 312 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 SULT2A1Q06520 285 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 RIPK1Q13546 671 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 PTPRRQ15256 657 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 ZRANB3Q5FWF4 1079 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 TRIM67Q6ZTA4 783 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 LYSMD3Q7Z3D4 306 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 GRASPQ7Z6J2 395 aaPredicted RBP26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 PARP9Q8IXQ6 854 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 LRCH3Q96II8 777 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 TNKS2Q9H2K2 1166 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 NEDD8-MDP1E9PL57 170 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 SOX1O00570 391 aaPredicted RBP26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 PABPC1P11940 636 aaKnown RBP26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 MYOGP15173 224 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 CTSOP43234 321 aaPredicted RBP26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 CACNG1Q06432 222 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 LRIT3Q3SXY7 679 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 ASTLQ6HA08 431 aaPredicted RBP26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 PSAPL1Q6NUJ1 521 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 C22orf39Q6P5X5 142 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 PIANPQ8IYJ0 282 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 CCNYL1Q8N7R7 359 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 TBC1D10AQ9BXI6 508 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 MARK1Q9P0L2 795 aa26.25■■□□□ 1.79
CCDC88C-205ENST00000553403 NOTCH4Q99466 2003 aa26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 HDAC3O15379 428 aa26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 DIAPH2O60879 1101 aa26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 ALPIP09923 528 aa26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 HNRNPH1P31943 449 aaKnown RBP26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 ADARP55265 1226 aaKnown RBP26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 MYLK3Q32MK0 819 aa26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 TREML1Q86YW5 311 aa26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 STK40Q8N2I9 435 aa26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 PCDH20Q8N6Y1 951 aaKnown RBP26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 RHEBL1Q8TAI7 183 aa26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 UTP4Q969X6 686 aaKnown RBP26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 TBRG4Q969Z0 631 aaKnown RBP eCLIP26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 ZNF707Q96C28 371 aaPredicted RBP26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 BTBD10Q9BSF8 475 aa26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 TFB2MQ9H5Q4 396 aaKnown RBP26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 ALG9Q9H6U8 611 aa26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 TAGLN3Q9UI15 199 aa26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 DOCK6Q96HP0 2047 aa26.24■■□□□ 1.79
CCDC88C-205ENST00000553403 SLC9A3R1O14745 358 aaPredicted RBP26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 PYGLP06737 847 aa26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 PKMP14618 531 aaKnown RBP26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 AOC1P19801 751 aa26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 PTGER3P43115 390 aa26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 STK19P49842 368 aaPredicted RBP26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 CDKN1CP49918 316 aaPredicted RBP26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 NFKB2Q00653 900 aa26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 PTPRNQ16849 979 aa26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 METTL21CQ5VZV1 264 aa26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 SEL1L3Q68CR1 1132 aa26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 RYBPQ8N488 228 aaPredicted RBP26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 EID2BQ96D98 161 aa26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 RPL10LQ96L21 214 aaKnown RBP26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 BIRC8Q96P09 236 aa26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 CPEB1Q9BZB8 566 aaKnown RBP26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 ZFYVE1Q9HBF4 777 aa26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 MED16Q9Y2X0 877 aa26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 OAS3Q9Y6K5 1087 aaKnown RBP26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 SLC30A1Q9Y6M5 507 aa26.23■■□□□ 1.79
CCDC88C-205ENST00000553403 NEMP2A6NFY4 417 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 CAPN8A6NHC0 703 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 ZBTB14O43829 449 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 TYRP14679 529 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 CDKN3Q16667 212 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 CERS6Q6ZMG9 384 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 KIAA1958Q8N8K9 716 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 PTERQ96BW5 349 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 MOCOSQ96EN8 888 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 ZSWIM3Q96MP5 696 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 LYSMD1Q96S90 227 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 SLC2A11Q9BYW1 496 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 DERL2Q9GZP9 239 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 LINC00597Q9H2U6 94 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 ZDHHC2Q9UIJ5 367 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 STK38LQ9Y2H1 464 aa26.22■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms