RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 DNAJC21Q5F1R6 531 aaKnown RBP21.12■□□□□ 0.97
VPS29-206ENST00000549578 HP1BP3Q5SSJ5 553 aaPredicted RBP21.12■□□□□ 0.97
VPS29-206ENST00000549578 TSTD2Q5T7W7 516 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 GCNT7Q6ZNI0 430 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 RAVER1Q8IY67 606 aaKnown RBP21.12■□□□□ 0.97
VPS29-206ENST00000549578 DENND6BQ8NEG7 585 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 C1orf216Q8TAB5 229 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 STYXQ8WUJ0 223 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 AGAP2Q99490 1192 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 GDF3Q9NR23 364 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 AASDHPPTQ9NRN7 309 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 ZDHHC18Q9NUE0 388 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 TMEM74BQ9NUR3 256 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 SAMD15Q9P1V8 674 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 FKBPLQ9UIM3 349 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 RAB23Q9ULC3 237 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 MAD1L1Q9Y6D9 718 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 BPTFQ12830 3046 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 POM121BA6NF01 834 aa21.11■□□□□ 0.97
VPS29-206ENST00000549578 CARSP49589 748 aaKnown RBP21.11■□□□□ 0.97
VPS29-206ENST00000549578 DCDC1P59894 354 aa21.11■□□□□ 0.97
VPS29-206ENST00000549578 LAMB3Q13751 1172 aa21.11■□□□□ 0.97
VPS29-206ENST00000549578 HENMT1Q5T8I9 393 aaKnown RBP21.11■□□□□ 0.97
VPS29-206ENST00000549578 RAET1GQ6H3X3 334 aa21.11■□□□□ 0.97
VPS29-206ENST00000549578 ESRP1Q6NXG1 681 aaKnown RBP21.11■□□□□ 0.97
VPS29-206ENST00000549578 CES3Q6UWW8 571 aa21.11■□□□□ 0.97
VPS29-206ENST00000549578 FAM151BQ6UXP7 276 aa21.11■□□□□ 0.97
VPS29-206ENST00000549578 ZNF765Q7L2R6 523 aa21.11■□□□□ 0.97
VPS29-206ENST00000549578 PIGKQ92643 395 aa21.11■□□□□ 0.97
VPS29-206ENST00000549578 KIFC1Q9BW19 673 aa21.11■□□□□ 0.97
VPS29-206ENST00000549578 TM9SF3Q9HD45 589 aa21.11■□□□□ 0.97
VPS29-206ENST00000549578 IL26Q9NPH9 171 aa21.11■□□□□ 0.97
VPS29-206ENST00000549578 NLE1Q9NVX2 485 aaPredicted RBP21.11■□□□□ 0.97
VPS29-206ENST00000549578 KCTD5Q9NXV2 234 aa21.11■□□□□ 0.97
VPS29-206ENST00000549578 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.11■□□□□ 0.97
VPS29-206ENST00000549578 SOX13Q9UN79 622 aa21.11■□□□□ 0.97
VPS29-206ENST00000549578 V9GYY5 206 aaPredicted RBP21.11■□□□□ 0.97
VPS29-206ENST00000549578 FPGTO14772 594 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 NMBRP28336 390 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 SPAM1P38567 509 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 ARSDP51689 593 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 DPTQ07507 201 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 HLTFQ14527 1009 aaKnown RBP eCLIP21.1■□□□□ 0.97
VPS29-206ENST00000549578 INPP5AQ14642 412 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 STAT4Q14765 748 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 LAYNQ6UX15 382 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 NLRP9Q7RTR0 991 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 IFT20Q8IY31 132 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 OR13J1Q8NGT2 312 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 PTCD2Q8WV60 388 aaKnown RBP21.1■□□□□ 0.97
VPS29-206ENST00000549578 BMFQ96LC9 184 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 PLEKHG4BQ96PX9 1271 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 WDR83Q9BRX9 315 aaKnown RBP21.1■□□□□ 0.97
VPS29-206ENST00000549578 SUDS3Q9H7L9 328 aaPredicted RBP21.1■□□□□ 0.97
VPS29-206ENST00000549578 RAD18Q9NS91 495 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 NFKBIL1Q9UBC1 381 aaPredicted RBP21.1■□□□□ 0.97
VPS29-206ENST00000549578 PILRBQ9UKJ0 227 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 GPR179Q6PRD1 2367 aa21.1■□□□□ 0.97
VPS29-206ENST00000549578 GAPDHSO14556 408 aaPredicted RBP21.09■□□□□ 0.97
VPS29-206ENST00000549578 BCAT2O15382 392 aaPredicted RBP21.09■□□□□ 0.97
VPS29-206ENST00000549578 GPR39O43194 453 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 SOD1P00441 154 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 ECHS1P30084 290 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 RACK1P63244 317 aaKnown RBP21.09■□□□□ 0.97
VPS29-206ENST00000549578 PDIA2Q13087 525 aaKnown RBP21.09■□□□□ 0.97
VPS29-206ENST00000549578 FASTKD3Q14CZ7 662 aaKnown RBP21.09■□□□□ 0.97
VPS29-206ENST00000549578 SKIDA1Q1XH10 827 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 PNCKQ6P2M8 343 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 IGDCC3Q8IVU1 814 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 SUMF1Q8NBK3 374 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 MFSD3Q96ES6 412 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 STAMBPL1Q96FJ0 436 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 SPATA16Q9BXB7 569 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 CDH19Q9H159 772 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 MRM3Q9HC36 420 aaKnown RBP21.09■□□□□ 0.97
VPS29-206ENST00000549578 CHMP2BQ9UQN3 213 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 ZNF106Q9H2Y7 1883 aaKnown RBP21.09■□□□□ 0.97
VPS29-206ENST00000549578 GLYATL1P3A0A0U1RQE8 302 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 E7ESA3 106 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 HADHAP40939 763 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 NBL1P41271 181 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 ELK3P41970 407 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 GPR1P46091 355 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 CHRNA6Q15825 494 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 ZDHHC20Q5W0Z9 365 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 CENPUQ71F23 418 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 CCDC25Q86WR0 208 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 SYT12Q8IV01 421 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 ANKMY2Q8IV38 441 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 CDKN2AIPNLQ96HQ2 116 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 TBATAQ96M53 351 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 EBNA1BP2Q99848 306 aaKnown RBP21.09■□□□□ 0.97
VPS29-206ENST00000549578 SEMA4AQ9H3S1 761 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 ANKZF1Q9H8Y5 726 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 TREX1Q9NSU2 369 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 RIMKLBQ9ULI2 386 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 OR1A2Q9Y585 309 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 HS3ST3A1Q9Y663 406 aa21.09■□□□□ 0.97
VPS29-206ENST00000549578 MAGEB16A2A368 324 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 FADS2P1A8MWK0 482 aa21.08■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms