RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 UROSP10746 265 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 PBX3P40426 434 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 GSSP48637 474 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 DET1Q7L5Y6 550 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 SPATA6LQ8N4H0 392 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 TMEM199Q8N511 208 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 TFAP2BQ92481 460 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 PLEKHG4BQ96PX9 1271 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 BTBD3Q9Y2F9 522 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 PGK1P00558 417 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 IL6P05231 212 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 TACR2P21452 398 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 SLC26A3P40879 764 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 SLC5A3P53794 718 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 LCP2Q13094 533 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 UBE2R2Q712K3 238 aaPredicted RBP12.5□□□□□ -0.41
COL4A6-209ENST00000545689 OTOP3Q7RTS5 596 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 AMIGO2Q86SJ2 522 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 CCDC185Q8N715 623 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 RTL3Q8N8U3 475 aaKnown RBP12.5□□□□□ -0.41
COL4A6-209ENST00000545689 RBM4BQ9BQ04 359 aaKnown RBP12.5□□□□□ -0.41
COL4A6-209ENST00000545689 RBM4Q9BWF3 364 aaKnown RBP12.5□□□□□ -0.41
COL4A6-209ENST00000545689 CLEC4MQ9H2X3 399 aaPredicted RBP12.5□□□□□ -0.41
COL4A6-209ENST00000545689 PCDH12Q9NPG4 1184 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 XPNPEP1Q9NQW7 623 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 IFT80Q9P2H3 777 aaPredicted RBP12.5□□□□□ -0.41
COL4A6-209ENST00000545689 FBXW11Q9UKB1 542 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 A8MX80 341 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 LRIG2O94898 1065 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 CDK9P50750 372 aaKnown RBP12.5□□□□□ -0.41
COL4A6-209ENST00000545689 ZNF280AP59817 542 aaPredicted RBP12.5□□□□□ -0.41
COL4A6-209ENST00000545689 NR1D2Q14995 579 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 RFTN2Q52LD8 501 aaPredicted RBP12.5□□□□□ -0.41
COL4A6-209ENST00000545689 TSTD2Q5T7W7 516 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 RASAL3Q86YV0 1011 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 DNAJB8Q8NHS0 232 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 NTAN1Q96AB6 310 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 NXNL1Q96CM4 212 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 TM6SF2Q9BZW4 377 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 EHD3Q9NZN3 535 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 DNAJB4Q9UDY4 337 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 GLYATL1P3A0A0U1RQE8 302 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 TRIM43BA6NCK2 446 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 TRAP1Q12931 704 aaKnown RBP12.49□□□□□ -0.41
COL4A6-209ENST00000545689 ITGADQ13349 1161 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 SLC5A9Q2M3M2 681 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 ZIK1Q3SY52 487 aaPredicted RBP12.49□□□□□ -0.41
COL4A6-209ENST00000545689 REP15Q6BDI9 236 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 MACC1Q6ZN28 852 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 ASZ1Q8WWH4 475 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 ZFYVE1Q9HBF4 777 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 KLHL1Q9NR64 748 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 FNIP2Q9P278 1114 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 SLC27A5Q9Y2P5 690 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 PIAS1O75925 651 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 VNN1O95497 513 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 EPORP19235 508 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 DNAJB1P25685 340 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 COPZ1P61923 177 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 SPIBQ01892 262 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 RGS1Q08116 209 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 IL10RBQ08334 325 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 HERC3Q15034 1050 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 TCEAL1Q15170 157 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 RGMBQ6NW40 437 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 C11orf88Q6PI97 169 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 TMC5Q6UXY8 1006 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 SLC24A5Q71RS6 500 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 OR4A15Q8NGL6 344 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 LRRN4Q8WUT4 740 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 BORCS5Q969J3 196 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 PPCDCQ96CD2 204 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 ZHX1-C8orf76Q96EF9 292 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 KLHL5Q96PQ7 755 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 CHRAC1Q9NRG0 131 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 DNAJC11Q9NVH1 559 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 SLC7A4O43246 635 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 SPAM1P38567 509 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 PTSQ03393 145 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 MAPK11Q15759 364 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 GATAD2AQ86YP4 633 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 PLD4Q96BZ4 506 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 ADI1Q9BV57 179 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 WDR55Q9H6Y2 383 aaPredicted RBP12.49□□□□□ -0.41
COL4A6-209ENST00000545689 LRTM1Q9HBL6 345 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.49□□□□□ -0.41
COL4A6-209ENST00000545689 TMEM59LQ9UK28 342 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 GABRDO14764 452 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 CYP7B1O75881 506 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 TSPAN8P19075 237 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 CXCR3P49682 368 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 DGCR6Q14129 220 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 TIGD2Q4W5G0 525 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 KIAA0930Q6ICG6 404 aaPredicted RBP12.49□□□□□ -0.41
COL4A6-209ENST00000545689 FAM151BQ6UXP7 276 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.49□□□□□ -0.41
COL4A6-209ENST00000545689 SLC35B2Q8TB61 432 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 SEZ6LQ9BYH1 1024 aa12.49□□□□□ -0.41
COL4A6-209ENST00000545689 INTS10Q9NVR2 710 aaKnown RBP12.49□□□□□ -0.41
COL4A6-209ENST00000545689 SNED1Q8TER0 1413 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms