RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 VARS2Q5ST30 1063 aaKnown RBP15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 ALG1LQ6GMV1 187 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 BORAQ6PGQ7 559 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 RTN4RL1Q86UN2 441 aaPredicted RBP15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 ATAD1Q8NBU5 361 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 OR2T34Q8NGX1 318 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 OR2T3Q8NH03 318 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 TRIB2Q92519 343 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 KIAA1191Q96A73 305 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 NMD3Q96D46 503 aaKnown RBP15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 CDKN2AIPNLQ96HQ2 116 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 NOL11Q9H8H0 719 aaKnown RBP15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 PTTG2Q9NZH5 202 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 SLC12A8A0AV02 714 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 PIP5K1BO14986 540 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 VPS4BO75351 444 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 TAF10Q12962 218 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 TRIM71Q2Q1W2 868 aaKnown RBP15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 PHYKPLQ8IUZ5 450 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 ALDH16A1Q8IZ83 802 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 OR13C4Q8NGS5 318 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 ZFP28Q8NHY6 868 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 GPR152Q8TDT2 470 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 UPF1Q92900 1129 aaKnown RBP eCLIP15.99■□□□□ 0.152e-9■■■■■ 48.9
CHMP1A-202ENST00000535997 EXT2Q93063 718 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 PPWD1Q96BP3 646 aaKnown RBP15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 SLC39A3Q9BRY0 314 aa15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.99■□□□□ 0.152e-7■■■■□ 21.5
CHMP1A-202ENST00000535997 SDR39U1Q9NRG7 319 aaPredicted RBP15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 CCM2LQ9NUG4 571 aaPredicted RBP15.99■□□□□ 0.15
CHMP1A-202ENST00000535997 ARHGAP10A1A4S6 786 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 H3BMM5 538 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 ANGPT2O15123 496 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 KERAO60938 352 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 CLASP2O75122 1294 aaKnown RBP15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 GJB3O75712 270 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 NDST3O95803 873 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 GFAPP14136 432 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 LBPP18428 481 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 KPNA1P52294 538 aaPredicted RBP15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 NAA20P61599 178 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 SPATS1Q496A3 300 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 CTXN3Q4LDR2 81 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 COQ5Q5HYK3 327 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 CLLU1OSQ5K130 101 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 PPP4R4Q6NUP7 873 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 B3GNT6Q6ZMB0 384 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 ANKFN1Q8N957 763 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 GOLM1Q8NBJ4 401 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 KLHDC9Q8NEP7 349 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 SLC29A1Q99808 456 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 GRIP2Q9C0E4 1043 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 DERL2Q9GZP9 239 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 RBM38Q9H0Z9 239 aaKnown RBP15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 PDFQ9HBH1 243 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 GID8Q9NWU2 228 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 TAS2R13Q9NYV9 303 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 DMTF1Q9Y222 760 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 AQP12BA6NM10 295 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 MYCNP04198 464 aaPredicted RBP15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 HMBSP08397 361 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 HSD17B1P14061 328 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 GRIA3P42263 894 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 FOXA1P55317 472 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 ATP6V0D1P61421 351 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 FAM189BP81408 668 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 CLCQ05315 142 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 LCP2Q13094 533 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 GALNT3Q14435 633 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 VPS26BQ4G0F5 336 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 MTX3Q5HYI7 312 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 CCSAPQ6IQ19 270 aaPredicted RBP15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 KLHDC10Q6PID8 442 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 ZBTB49Q6ZSB9 765 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 CARM1Q86X55 608 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 CIR1Q86X95 450 aaPredicted RBP15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 AQP12AQ8IXF9 295 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 DDIASQ8IXT1 998 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 BBS5Q8N3I7 341 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 TSPEARQ8WU66 669 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 CANT1Q8WVQ1 401 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 TRIB3Q96RU7 358 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 TCF12Q99081 682 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 HAUS8Q9BT25 410 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 TRMT13Q9NUP7 481 aaKnown RBP15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 PRG3Q9Y2Y8 225 aaPredicted RBP15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 RNF11Q9Y3C5 154 aa15.98■□□□□ 0.15
CHMP1A-202ENST00000535997 LCHNA4D1U4 455 aa15.97■□□□□ 0.15
CHMP1A-202ENST00000535997 NR5A2O00482 541 aa15.97■□□□□ 0.15
CHMP1A-202ENST00000535997 IDO1P14902 403 aa15.97■□□□□ 0.15
CHMP1A-202ENST00000535997 GRIK2Q13002 908 aa15.97■□□□□ 0.15
CHMP1A-202ENST00000535997 MRPL58Q14197 206 aaKnown RBP15.97■□□□□ 0.15
CHMP1A-202ENST00000535997 GRB7Q14451 532 aa15.97■□□□□ 0.15
CHMP1A-202ENST00000535997 RPS6KA2Q15349 733 aa15.97■□□□□ 0.15
CHMP1A-202ENST00000535997 MYLK3Q32MK0 819 aa15.97■□□□□ 0.15
CHMP1A-202ENST00000535997 HMBOX1Q6NT76 420 aa15.97■□□□□ 0.15
CHMP1A-202ENST00000535997 ISLR2Q6UXK2 745 aa15.97■□□□□ 0.15
CHMP1A-202ENST00000535997 AMIGO2Q86SJ2 522 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms