RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 IL17CQ9P0M4 197 aa21.17■□□□□ 0.98
VPS28-212ENST00000530836 MTO1Q9Y2Z2 717 aaKnown RBP21.17■□□□□ 0.98
VPS28-212ENST00000530836 TSPAN11A1L157 253 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 ANTXRLA6NF34 631 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 ASMTLO95671 621 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 UGT2B4P06133 528 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 GSTA1P08263 222 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 CHRM1P11229 460 aaPredicted RBP21.16■□□□□ 0.98
VPS28-212ENST00000530836 CTPS1P17812 591 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 GABRB3P28472 473 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 HNF1BP35680 557 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 PTPN5P54829 565 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 SEC13P55735 322 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 GAS6Q14393 721 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 HNRNPA1L2Q32P51 320 aaKnown RBP21.16■□□□□ 0.98
VPS28-212ENST00000530836 FNDC3BQ53EP0 1204 aaKnown RBP21.16■□□□□ 0.98
VPS28-212ENST00000530836 Q6ZS52 159 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 CHST14Q8NCH0 376 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 SNX15Q9NRS6 342 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 INTS10Q9NVR2 710 aaKnown RBP21.16■□□□□ 0.98
VPS28-212ENST00000530836 POLR3BQ9NW08 1133 aaPredicted RBP21.16■□□□□ 0.98
VPS28-212ENST00000530836 DKK3Q9UBP4 350 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 HCN2Q9UL51 889 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 GRID1Q9ULK0 1009 aa21.16■□□□□ 0.98
VPS28-212ENST00000530836 KIAA1549LQ6ZVL6 1849 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 NPC1O15118 1278 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 BUD23O43709 281 aaKnown RBP21.15■□□□□ 0.98
VPS28-212ENST00000530836 GLRA3O75311 464 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 ALPIP09923 528 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 MRPS21P82921 87 aaKnown RBP21.15■□□□□ 0.98
VPS28-212ENST00000530836 MPP1Q00013 466 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 POU4F1Q01851 419 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 AARS2Q5JTZ9 985 aaKnown RBP21.15■□□□□ 0.98
VPS28-212ENST00000530836 HHATQ5VTY9 493 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 KYAT3Q6YP21 454 aaKnown RBP21.15■□□□□ 0.98
VPS28-212ENST00000530836 LYSMD3Q7Z3D4 306 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 CCDC91Q7Z6B0 441 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 CBARPQ8N350 705 aaPredicted RBP21.15■□□□□ 0.98
VPS28-212ENST00000530836 CKAP2Q8WWK9 683 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 KLHL32Q96NJ5 620 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 IER2Q9BTL4 223 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 EPN3Q9H201 632 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 PCMTD2Q9NV79 361 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 WASF2Q9Y6W5 498 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 C1orf232A0A0U1RR37 186 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 PRNPP04156 253 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 CRABP2P29373 138 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 PMLP29590 882 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 PTPRCAPQ14761 206 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 LRRC14Q15048 493 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 TYSND1Q2T9J0 566 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 C2orf27AQ580R0 203 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 ZNF805Q5CZA5 627 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 RNF187Q5TA31 235 aaPredicted RBP21.15■□□□□ 0.98
VPS28-212ENST00000530836 ZDHHC20Q5W0Z9 365 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 MAMSTRQ6ZN01 415 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 TAX1BP1Q86VP1 789 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 ATXN7L3BQ96GX2 97 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 SLC13A1Q9BZW2 595 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 SUDS3Q9H7L9 328 aaPredicted RBP21.15■□□□□ 0.98
VPS28-212ENST00000530836 SUN2Q9UH99 717 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 APPL1Q9UKG1 709 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 ANKRD6Q9Y2G4 727 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 PLLPQ9Y342 182 aa21.15■□□□□ 0.98
VPS28-212ENST00000530836 FAM95CA0A1B0GW59 222 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 GMNCA6NCL1 334 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 CHURC1-FNTBB4DL54 471 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 ATG13O75143 517 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 LEFTY1O75610 366 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 HAUS5O94927 633 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 S1PR4O95977 384 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 CYP2A6P11509 494 aaPredicted RBP21.14■□□□□ 0.97
VPS28-212ENST00000530836 TIE1P35590 1138 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 WDR4P57081 412 aaKnown RBP21.14■□□□□ 0.97
VPS28-212ENST00000530836 MTAPQ13126 283 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 PDE1CQ14123 709 aaPredicted RBP21.14■□□□□ 0.97
VPS28-212ENST00000530836 USP10Q14694 798 aaKnown RBP21.14■□□□□ 0.97
VPS28-212ENST00000530836 CDKN3Q16667 212 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 LVRNQ6Q4G3 990 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 ZSWIM9Q86XI8 627 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 SPEM1Q8N4L4 309 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 TMIEQ8NEW7 156 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 RPLP0P6Q8NHW5 317 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 GRIN3AQ8TCU5 1115 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 OR8D1Q8WZ84 308 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 TBRG4Q969Z0 631 aaKnown RBP eCLIP21.14■□□□□ 0.97
VPS28-212ENST00000530836 TSPAN17Q96FV3 270 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 MAGEB18Q96M61 343 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 TMEM245Q9H330 911 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 ZKSCAN7Q9P0L1 754 aaPredicted RBP21.14■□□□□ 0.97
VPS28-212ENST00000530836 THAP10Q9P2Z0 257 aaPredicted RBP21.14■□□□□ 0.97
VPS28-212ENST00000530836 TLK1Q9UKI8 766 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 SLC39A10Q9ULF5 831 aa21.14■□□□□ 0.97
VPS28-212ENST00000530836 CCL22O00626 93 aa21.13■□□□□ 0.97
VPS28-212ENST00000530836 SLC4A1P02730 911 aa21.13■□□□□ 0.97
VPS28-212ENST00000530836 COL6A2P12110 1019 aa21.13■□□□□ 0.97
VPS28-212ENST00000530836 HNRNPLP14866 589 aaKnown RBP eCLIP21.13■□□□□ 0.97
VPS28-212ENST00000530836 STMN1P16949 149 aa21.13■□□□□ 0.97
VPS28-212ENST00000530836 ZNF30P17039 623 aa21.13■□□□□ 0.97
VPS28-212ENST00000530836 MC4RP32245 332 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms