RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 CHST3Q7LGC8 479 aa7.36□□□□□ -1.23
CSDE1-213ENST00000530784 AFAP1L1Q8TED9 768 aa7.36□□□□□ -1.23
CSDE1-213ENST00000530784 ARNTL2Q8WYA1 636 aa7.36□□□□□ -1.23
CSDE1-213ENST00000530784 KCNJ9Q92806 393 aa7.36□□□□□ -1.23
CSDE1-213ENST00000530784 TAAR1Q96RJ0 339 aa7.36□□□□□ -1.23
CSDE1-213ENST00000530784 PIGSQ96S52 555 aa7.36□□□□□ -1.23
CSDE1-213ENST00000530784 IWS1Q96ST2 819 aa7.36□□□□□ -1.23
CSDE1-213ENST00000530784 UBAC1Q9BSL1 405 aa7.36□□□□□ -1.23
CSDE1-213ENST00000530784 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.36□□□□□ -1.23
CSDE1-213ENST00000530784 MRPL11Q9Y3B7 192 aaKnown RBP7.36□□□□□ -1.23
CSDE1-213ENST00000530784 MTCH2Q9Y6C9 303 aa7.36□□□□□ -1.23
CSDE1-213ENST00000530784 CHD9Q3L8U1 2897 aa7.36□□□□□ -1.23
CSDE1-213ENST00000530784 EPOPA6NHQ4 379 aa7.35□□□□□ -1.23
CSDE1-213ENST00000530784 HMX3A6NHT5 357 aa7.35□□□□□ -1.23
CSDE1-213ENST00000530784 HIP1O00291 1037 aa7.35□□□□□ -1.23
CSDE1-213ENST00000530784 PKMP14618 531 aaKnown RBP7.35□□□□□ -1.23
CSDE1-213ENST00000530784 NANOS2P60321 138 aaKnown RBP7.35□□□□□ -1.23
CSDE1-213ENST00000530784 LVRNQ6Q4G3 990 aa7.35□□□□□ -1.23
CSDE1-213ENST00000530784 SYNE3Q6ZMZ3 975 aa7.35□□□□□ -1.23
CSDE1-213ENST00000530784 CHD1LQ86WJ1 897 aa7.35□□□□□ -1.23
CSDE1-213ENST00000530784 CCDC25Q86WR0 208 aa7.35□□□□□ -1.23
CSDE1-213ENST00000530784 SMC5Q8IY18 1101 aa7.35□□□□□ -1.23
CSDE1-213ENST00000530784 VPS52Q8N1B4 723 aa7.35□□□□□ -1.23
CSDE1-213ENST00000530784 KRT23Q9C075 422 aa7.35□□□□□ -1.23
CSDE1-213ENST00000530784 RWDD1Q9H446 243 aaPredicted RBP7.35□□□□□ -1.23
CSDE1-213ENST00000530784 PXMP2Q9NR77 195 aa7.35□□□□□ -1.23
CSDE1-213ENST00000530784 SLC22A11Q9NSA0 550 aa7.35□□□□□ -1.23
CSDE1-213ENST00000530784 CTNNA3Q9UI47 895 aa7.35□□□□□ -1.23
CSDE1-213ENST00000530784 SLC25A13Q9UJS0 675 aa7.35□□□□□ -1.23
CSDE1-213ENST00000530784 GBF1Q92538 1859 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 LAMA4Q16363 1823 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 FAM90A20PA6NIJ5 464 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 NPIPB13A6NJU9 1138 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 NPIPB5A8MRT5 1133 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 NPIPB4C9JG80 1138 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 H0Y3Z8 333 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 EIF3JO75822 258 aaKnown RBP7.34□□□□□ -1.23
CSDE1-213ENST00000530784 ZNF286BP0CG31 522 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 LYL1P12980 280 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 KLRC2P26717 231 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 THBS3P49746 956 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 HSD17B4P51659 736 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 PDCLQ13371 301 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 SEMA3AQ14563 771 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 TIGD6Q17RP2 521 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 RINLQ6ZS11 566 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 RNF144BQ7Z419 303 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 SLC25A41Q8N5S1 370 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 PPTC7Q8NI37 304 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 CTAGE1Q96RT6 745 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 TRIM31Q9BZY9 425 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 JMJD4Q9H9V9 463 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 VAT1LQ9HCJ6 419 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 SIRT3Q9NTG7 399 aaPredicted RBP7.34□□□□□ -1.23
CSDE1-213ENST00000530784 TMEM248Q9NWD8 314 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 HDAC6Q9UBN7 1215 aa7.34□□□□□ -1.23
CSDE1-213ENST00000530784 SCN10AQ9Y5Y9 1956 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 KRTAP29-1A8MX34 341 aaPredicted RBP7.33□□□□□ -1.24
CSDE1-213ENST00000530784 KLRF2D3W0D1 207 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 IPO5O00410 1097 aaKnown RBP7.33□□□□□ -1.24
CSDE1-213ENST00000530784 IKBKBO14920 756 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 ZBTB5O15062 677 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 HNRNPRO43390 633 aaKnown RBP7.33□□□□□ -1.24
CSDE1-213ENST00000530784 NBNO60934 754 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 CXCL10P02778 98 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 DEFB103AP81534 67 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 NUCB1Q02818 461 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 ALKBH1Q13686 389 aaKnown RBP7.33□□□□□ -1.24
CSDE1-213ENST00000530784 GPNMBQ14956 572 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 WASHC2DQ5SRD0 308 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 JMJD6Q6NYC1 403 aaPredicted RBP7.33□□□□□ -1.24
CSDE1-213ENST00000530784 SYT13Q7L8C5 426 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 TMCO2Q7Z6W1 182 aaPredicted RBP7.33□□□□□ -1.24
CSDE1-213ENST00000530784 CSGALNACT1Q8TDX6 532 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 SPATA33Q96N06 139 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 C1QTNF1Q9BXJ1 281 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 ISCUQ9H1K1 167 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 MRPL44Q9H9J2 332 aaKnown RBP7.33□□□□□ -1.24
CSDE1-213ENST00000530784 Q9N2J8 555 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 PNRC2Q9NPJ4 139 aaKnown RBP7.33□□□□□ -1.24
CSDE1-213ENST00000530784 MAP3K20Q9NYL2 800 aaKnown RBP7.33□□□□□ -1.24
CSDE1-213ENST00000530784 TBC1D14Q9P2M4 693 aa7.33□□□□□ -1.24
CSDE1-213ENST00000530784 COL4A4P53420 1690 aaPredicted RBP7.32□□□□□ -1.24
CSDE1-213ENST00000530784 TRBV5-7A0A0A0MS05 114 aa7.32□□□□□ -1.24
CSDE1-213ENST00000530784 FAM90A8PA6NJQ4 464 aa7.32□□□□□ -1.24
CSDE1-213ENST00000530784 E7EVH7 732 aa7.32□□□□□ -1.24
CSDE1-213ENST00000530784 HAS3O00219 553 aa7.32□□□□□ -1.24
CSDE1-213ENST00000530784 TNFRSF13BO14836 293 aaPredicted RBP7.32□□□□□ -1.24
CSDE1-213ENST00000530784 GJB5O95377 273 aa7.32□□□□□ -1.24
CSDE1-213ENST00000530784 GGPS1O95749 300 aa7.32□□□□□ -1.24
CSDE1-213ENST00000530784 FAM90A13PP0C7W8 464 aa7.32□□□□□ -1.24
CSDE1-213ENST00000530784 FAM90A24PP0C7X0 464 aa7.32□□□□□ -1.24
CSDE1-213ENST00000530784 CHN1P15882 459 aa7.32□□□□□ -1.24
CSDE1-213ENST00000530784 UBA1P22314 1058 aaKnown RBP7.32□□□□□ -1.24
CSDE1-213ENST00000530784 TKTP29401 623 aaKnown RBP7.32□□□□□ -1.24
CSDE1-213ENST00000530784 TYK2P29597 1187 aa7.32□□□□□ -1.24
CSDE1-213ENST00000530784 HOXA13P31271 388 aaPredicted RBP7.32□□□□□ -1.24
CSDE1-213ENST00000530784 CCKARP32238 428 aa7.32□□□□□ -1.24
CSDE1-213ENST00000530784 PRKAA2P54646 552 aa7.32□□□□□ -1.24
CSDE1-213ENST00000530784 TRDNQ13061 729 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms