RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 RYKP34925 604 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 GP5P40197 560 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 MATR3P43243 847 aaKnown RBP eCLIP3.35□□□□□ -1.87
CD44-229ENST00000528672 CENPAP49450 140 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 CLCN5P51795 746 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 SH3BGRP55822 239 aaPredicted RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 GRIK3Q13003 919 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 PPP2R5CQ13362 524 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 GRAPQ13588 217 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 KCNC3Q14003 757 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 PKN2Q16513 984 aaKnown RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 TCTN1Q2MV58 587 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 ODF2Q5BJF6 829 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 ZNF805Q5CZA5 627 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 KRBOX4Q5JUW0 171 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 KIAA1755Q5JYT7 1200 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 C6orf141Q5SZD1 244 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 ARMC4Q5T2S8 1044 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 CST9LP1Q5W188 147 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 KRT79Q5XKE5 535 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 FCRLBQ6BAA4 426 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 AAGABQ6PD74 315 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 C11orf88Q6PI97 169 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 LCTLQ6UWM7 567 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 PET117Q6UWS5 81 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 CFAP77Q6ZQR2 320 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 SEPT14Q6ZU15 432 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 TMC8Q8IU68 726 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 ERC1Q8IUD2 1116 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 CCDC13Q8IYE1 715 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 RNF168Q8IYW5 571 aaPredicted RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 CEP57L1Q8IYX8 460 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 FAM185AQ8N0U4 392 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 TMCO5AQ8N6Q1 288 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 ARL10Q8N8L6 244 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 HJURPQ8NCD3 748 aaPredicted RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 KIF18AQ8NI77 898 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 GDAP1Q8TB36 358 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 SETD6Q8TBK2 473 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 C17orf50Q8WW18 174 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 MRPS27Q92552 414 aaKnown RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 SNX21Q969T3 373 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 FER1L6-AS2Q96M78 137 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 GSDMAQ96QA5 445 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 FNBP1Q96RU3 617 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 GAD1Q99259 594 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 SEPT5Q99719 369 aaPredicted RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 MXRA8Q9BRK3 442 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 THUMPD3Q9BV44 507 aaKnown RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 C2orf40Q9H1Z8 148 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 MOV10Q9HCE1 1003 aaKnown RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 WDR6Q9NNW5 1121 aaKnown RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 MTRRQ9UBK8 725 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 ZMAT5Q9UDW3 170 aaKnown RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 OSGIN1Q9UJX0 560 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 EXO1Q9UQ84 846 aaKnown RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 BTBD3Q9Y2F9 522 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 N6AMT1Q9Y5N5 214 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 CEPT1Q9Y6K0 416 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 SMIM35A0A1B0GVV1 85 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 C17orf102A2RUQ5 167 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 DPPA5A6NC42 116 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 LINC01548A6NM66 108 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 INPPL1O15357 1258 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 SLC7A4O43246 635 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 UGDHO60701 494 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 ATP2C2O75185 946 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 PLAUP00749 431 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 FYNP06241 537 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 CD63P08962 238 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 ERCC2P18074 760 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 TFEBP19484 476 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 ATP5F1P24539 256 aaPredicted RBP3.34□□□□□ -1.87
CD44-229ENST00000528672 PTAFRP25105 342 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 ALDH1B1P30837 517 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 SHMT1P34896 483 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 GPR12P47775 334 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 SUOXP51687 545 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 CSE1LP55060 971 aaKnown RBP3.34□□□□□ -1.87
CD44-229ENST00000528672 HSD17B7P56937 341 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 MRPS21P82921 87 aaKnown RBP3.34□□□□□ -1.87
CD44-229ENST00000528672 SORDQ00796 357 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 DDR1Q08345 913 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 SLC10A2Q12908 348 aaPredicted RBP3.34□□□□□ -1.87
CD44-229ENST00000528672 ITGADQ13349 1161 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 SMC1AQ14683 1233 aaKnown RBP3.34□□□□□ -1.87
CD44-229ENST00000528672 KRT24Q2M2I5 525 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 LETM2Q2VYF4 491 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 USP41Q3LFD5 358 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 CERKLQ49MI3 558 aaPredicted RBP3.34□□□□□ -1.87
CD44-229ENST00000528672 IRGCQ6NXR0 463 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 LRIG3Q6UXM1 1119 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 TRIM74Q86UV6 250 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 TRIM73Q86UV7 250 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 HAPLN4Q86UW8 402 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 AACSQ86V21 672 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 HACE1Q8IYU2 909 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 MYOCDQ8IZQ8 938 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 NUP93Q8N1F7 819 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 C8orf58Q8NAV2 365 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms