RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 FMO4P31512 558 aa20.64■□□□□ 0.9
VPS28-209ENST00000528142 HNF1BP35680 557 aa20.64■□□□□ 0.9
VPS28-209ENST00000528142 ECT2LQ008S8 904 aa20.64■□□□□ 0.9
VPS28-209ENST00000528142 SULT2A1Q06520 285 aa20.64■□□□□ 0.9
VPS28-209ENST00000528142 RCN2Q14257 317 aa20.64■□□□□ 0.9
VPS28-209ENST00000528142 ISCA2Q86U28 154 aa20.64■□□□□ 0.9
VPS28-209ENST00000528142 PCDH20Q8N6Y1 951 aaKnown RBP20.64■□□□□ 0.9
VPS28-209ENST00000528142 ECHDC3Q96DC8 303 aa20.64■□□□□ 0.9
VPS28-209ENST00000528142 CDH19Q9H159 772 aa20.64■□□□□ 0.9
VPS28-209ENST00000528142 PIDD1Q9HB75 910 aa20.64■□□□□ 0.9
VPS28-209ENST00000528142 SLC40A1Q9NP59 571 aa20.64■□□□□ 0.9
VPS28-209ENST00000528142 ACSS2Q9NR19 701 aa20.64■□□□□ 0.9
VPS28-209ENST00000528142 VPS9D1Q9Y2B5 631 aa20.64■□□□□ 0.9
VPS28-209ENST00000528142 ANKRD36A6QL64 1941 aa20.64■□□□□ 0.9
VPS28-209ENST00000528142 UBA6A0AVT1 1052 aaPredicted RBP20.64■□□□□ 0.89
VPS28-209ENST00000528142 SLC9A3R1O14745 358 aaPredicted RBP20.64■□□□□ 0.89
VPS28-209ENST00000528142 RASSF9O75901 435 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 CHRNGP07510 517 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 ZNF37AP17032 561 aaPredicted RBP20.64■□□□□ 0.89
VPS28-209ENST00000528142 TTPAP49638 278 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 KCNJ2P63252 427 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 ASPHQ12797 758 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 KRT72Q14CN4 511 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 DUSP6Q16828 381 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 CARD16Q5EG05 197 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 ZRANB3Q5FWF4 1079 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 ARL13AQ5H913 290 aaPredicted RBP20.64■□□□□ 0.89
VPS28-209ENST00000528142 TMEM215Q68D42 235 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 LSMEM2Q8N112 164 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 CELF5Q8N6W0 485 aaKnown RBP20.64■□□□□ 0.89
VPS28-209ENST00000528142 SLC7A6OSQ96CW6 309 aaPredicted RBP20.64■□□□□ 0.89
VPS28-209ENST00000528142 SLC2A11Q9BYW1 496 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 CPEB1Q9BZB8 566 aaKnown RBP20.64■□□□□ 0.89
VPS28-209ENST00000528142 RASSF4Q9H2L5 321 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 ZFYVE1Q9HBF4 777 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 RAP2CQ9Y3L5 183 aa20.64■□□□□ 0.89
VPS28-209ENST00000528142 NEMP2A6NFY4 417 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 CAPN8A6NHC0 703 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 SRP72O76094 671 aaKnown RBP20.63■□□□□ 0.89
VPS28-209ENST00000528142 CD1DP15813 335 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 TFEBP19484 476 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 KCNA5P22460 613 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 CCR10P46092 362 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 KCNC1P48547 511 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 IDH3AP50213 366 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 KIAA1958Q8N8K9 716 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 RSPRY1Q96DX4 576 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 LYSMD1Q96S90 227 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 ILKAPQ9H0C8 392 aaPredicted RBP20.63■□□□□ 0.89
VPS28-209ENST00000528142 LRMDAQ9H2I8 198 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 ARL8BQ9NVJ2 186 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 FBXO10Q9UK96 956 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 PPIL1Q9Y3C6 166 aa20.63■□□□□ 0.89
VPS28-209ENST00000528142 RFXAPO00287 272 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 GAPDHSO14556 408 aaPredicted RBP20.62■□□□□ 0.89
VPS28-209ENST00000528142 TRIM24O15164 1050 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 NPHS1O60500 1241 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 CCDC22O60826 627 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 NQO1P15559 274 aaKnown RBP20.62■□□□□ 0.89
VPS28-209ENST00000528142 CCNHP51946 323 aaPredicted RBP20.62■□□□□ 0.89
VPS28-209ENST00000528142 CACNG1Q06432 222 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 KCNC3Q14003 757 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 PTPRNQ16849 979 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 AARS2Q5JTZ9 985 aaKnown RBP20.62■□□□□ 0.89
VPS28-209ENST00000528142 TMC5Q6UXY8 1006 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 DPY19L3Q6ZPD9 716 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 TRIM67Q6ZTA4 783 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 KIF2BQ8N4N8 673 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 VN1R2Q8NFZ6 395 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 GDPD5Q8WTR4 605 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 PTERQ96BW5 349 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 CCDC126Q96EE4 140 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 PTCD3Q96EY7 689 aaKnown RBP20.62■□□□□ 0.89
VPS28-209ENST00000528142 TUBB6Q9BUF5 446 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 SUV39H2Q9H5I1 410 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 POMKQ9H5K3 350 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 TAS2R13Q9NYV9 303 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 FNDC3AQ9Y2H6 1198 aaKnown RBP20.62■□□□□ 0.89
VPS28-209ENST00000528142 REV3LO60673 3130 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 C1orf232A0A0U1RR37 186 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 A8MT66 165 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 CAPN14A8MX76 684 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 PFDN6O15212 129 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 ZBTB14O43829 449 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 OR1I1O60431 355 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 RHOBTB1O94844 696 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 CLDN7O95471 211 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 POP4O95707 220 aaKnown RBP20.62■□□□□ 0.89
VPS28-209ENST00000528142 SERPINA6P08185 405 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 CD9P21926 228 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 MPSTP25325 297 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 NRIP1P48552 1158 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 ADARP55265 1226 aaKnown RBP20.62■□□□□ 0.89
VPS28-209ENST00000528142 PDAP1Q13442 181 aaKnown RBP20.62■□□□□ 0.89
VPS28-209ENST00000528142 DHCR24Q15392 516 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 ACCSLQ4AC99 568 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 PPP2R2DQ66LE6 453 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 AHI1Q8N157 1196 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 NAT16Q8N8M0 369 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 RILPQ96NA2 401 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms