RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PRKAR2AP13861 404 aaKnown RBP21.19■□□□□ 0.98
VPS28-205ENST00000526204 GFAPP14136 432 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 ZNF26P17031 533 aaPredicted RBP21.19■□□□□ 0.98
VPS28-205ENST00000526204 MIER2Q8N344 545 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 CDK5RAP1Q96SZ6 601 aaKnown RBP21.19■□□□□ 0.98
VPS28-205ENST00000526204 MRPS26Q9BYN8 205 aaKnown RBP21.19■□□□□ 0.98
VPS28-205ENST00000526204 DERL2Q9GZP9 239 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 TMEM161AQ9NX61 479 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 TAS2R13Q9NYV9 303 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 LZTS1Q9Y250 596 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 A0A0J9YYE9 177 aa21.18■□□□□ 0.98
VPS28-205ENST00000526204 FAM58BPP0C7Q3 252 aa21.18■□□□□ 0.98
VPS28-205ENST00000526204 ATP6V0D1P61421 351 aa21.18■□□□□ 0.98
VPS28-205ENST00000526204 MBTPS1Q14703 1052 aa21.18■□□□□ 0.98
VPS28-205ENST00000526204 TRAF7Q6Q0C0 670 aa21.18■□□□□ 0.98
VPS28-205ENST00000526204 DHFR2Q86XF0 187 aa21.18■□□□□ 0.98
VPS28-205ENST00000526204 NAT14Q8WUY8 206 aa21.18■□□□□ 0.98
VPS28-205ENST00000526204 MYEOVQ96EZ4 313 aa21.18■□□□□ 0.98
VPS28-205ENST00000526204 PSKH2Q96QS6 385 aa21.18■□□□□ 0.98
VPS28-205ENST00000526204 CYP2S1Q96SQ9 504 aa21.18■□□□□ 0.98
VPS28-205ENST00000526204 UHRF1Q96T88 793 aaPredicted RBP21.18■□□□□ 0.98
VPS28-205ENST00000526204 CCDC68Q9H2F9 335 aa21.18■□□□□ 0.98
VPS28-205ENST00000526204 ARIH1Q9Y4X5 557 aaPredicted RBP21.18■□□□□ 0.98
VPS28-205ENST00000526204 H3BMM5 538 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 SIX3O95343 332 aaPredicted RBP21.17■□□□□ 0.98
VPS28-205ENST00000526204 PIRTP0C851 137 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 FGFR3P22607 806 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 ACLYP53396 1101 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 GNA12Q03113 381 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 DYNC1I2Q13409 638 aaKnown RBP21.17■□□□□ 0.98
VPS28-205ENST00000526204 C6orf10Q5SRN2 563 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 C6orf52Q5T4I8 152 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 AFTPHQ6ULP2 937 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 SATL1Q86VE3 508 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 DGCR14Q96DF8 476 aaKnown RBP21.17■□□□□ 0.98
VPS28-205ENST00000526204 CCSER2Q9H7U1 834 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 CENPFP49454 3210 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 LCHNA4D1U4 455 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 SYCE1LA8MT33 242 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 PIP5K1BO14986 540 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 RHOBTB1O94844 696 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 HOXD9P28356 352 aaPredicted RBP21.17■□□□□ 0.98
VPS28-205ENST00000526204 SLC7A2P52569 658 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 ZNF140P52738 457 aaPredicted RBP21.17■□□□□ 0.98
VPS28-205ENST00000526204 CDKL1Q00532 357 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 CREB5Q02930 508 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 RAD51Q06609 339 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 LCP2Q13094 533 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 EML3Q32P44 896 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 LAYNQ6UX15 382 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 HERC6Q8IVU3 1022 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 ABI1Q8IZP0 508 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 PRICKLE1Q96MT3 831 aaPredicted RBP21.17■□□□□ 0.98
VPS28-205ENST00000526204 GPATCH1Q9BRR8 931 aaKnown RBP21.17■□□□□ 0.98
VPS28-205ENST00000526204 CINPQ9BW66 212 aaPredicted RBP21.17■□□□□ 0.98
VPS28-205ENST00000526204 GPR62Q9BZJ7 368 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 NMRK2Q9NPI5 230 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 RNF112Q9ULX5 631 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 VPS9D1Q9Y2B5 631 aa21.17■□□□□ 0.98
VPS28-205ENST00000526204 A0A0D9SEW6 157 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 CLASP2O75122 1294 aaKnown RBP21.16■□□□□ 0.98
VPS28-205ENST00000526204 MATN4O95460 622 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 LBPP18428 481 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 TAF1AQ15573 450 aaPredicted RBP21.16■□□□□ 0.98
VPS28-205ENST00000526204 IL31Q6EBC2 164 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 DDIASQ8IXT1 998 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 CFAP52Q8N1V2 620 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 FBXO39Q8N4B4 442 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 SNX31Q8N9S9 440 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 C2orf15Q8WU43 125 aaKnown RBP21.16■□□□□ 0.98
VPS28-205ENST00000526204 LRTOMTQ8WZ04 291 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 ZNF597Q96LX8 424 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 UBA6A0AVT1 1052 aaPredicted RBP21.16■□□□□ 0.98
VPS28-205ENST00000526204 ACSL4O60488 711 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 PGM3O95394 542 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 TFAP2AP05549 437 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 PSMA3P25788 255 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 USP41Q3LFD5 358 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 RNF19BQ6ZMZ0 732 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 PHYKPLQ8IUZ5 450 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 MINDY1Q8N5J2 469 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 TRPC4APQ8TEL6 797 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 ZUFSPQ96AP4 578 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 SLCO4A1Q96BD0 722 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 SLC2A11Q9BYW1 496 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 SDR39U1Q9NRG7 319 aaPredicted RBP21.16■□□□□ 0.98
VPS28-205ENST00000526204 GID8Q9NWU2 228 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 UBA2Q9UBT2 640 aaPredicted RBP21.16■□□□□ 0.98
VPS28-205ENST00000526204 SNX13Q9Y5W8 968 aa21.16■□□□□ 0.98
VPS28-205ENST00000526204 C2orf81A6NN90 581 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 SUPT3HB4E1H0 165 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 NR5A2O00482 541 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 PPP6CO00743 305 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 ANGPT2O15123 496 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 SUPT3HO75486 399 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 NDUFS3O75489 264 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 ALDH2P05091 517 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 IDO1P14902 403 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 PSMC3P17980 439 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 CES1P23141 567 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms