RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 ZBTB2Q8N680 514 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 SH3GL2Q99962 352 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 DPEP2Q9H4A9 486 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 BTRCQ9Y297 605 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 TCRBV9S1A1TA0A576 114 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 CLDN4O14493 209 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 RFXANKO14593 260 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 MFSD11O43934 449 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 PCCBP05166 539 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 GABRB2P47870 512 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 SLC10A6Q3KNW5 377 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 LINGO4Q6UY18 593 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 TRAPPC9Q96Q05 1148 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 KCTD15Q96SI1 283 aaPredicted RBP16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 PRRG4Q9BZD6 226 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 A0A087WXM4 84 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 FPGTO14772 594 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 CCL5P13501 91 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 CMPK1P30085 196 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 CAMK1DQ8IU85 385 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 RTL3Q8N8U3 475 aaKnown RBP16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 PCDHB18PQ96TA0 734 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 SGK2Q9HBY8 427 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 ATRNL1Q5VV63 1379 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 PNMA8CA0A1B0GUJ8 204 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 INSIG1O15503 277 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 NUDT17P0C025 328 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 COL6A2P12110 1019 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 MANFP55145 182 aaKnown RBP16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 TIMM50Q3ZCQ8 353 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 ZNF618Q5T7W0 954 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 DUPD1Q68J44 220 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 TMC5Q6UXY8 1006 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 OR7D4Q8NG98 312 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 PHF10Q8WUB8 498 aaKnown RBP16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 TNKS2Q9H2K2 1166 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 GEMIN8Q9NWZ8 242 aaKnown RBP16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 CLDND1Q9NY35 253 aa16.22■□□□□ 0.19
PCDHA3-201ENST00000522353 LRCH4O75427 683 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 CCNYL3P0C7X3 344 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 IL10RBQ08334 325 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 BST1Q10588 318 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 HNRNPDQ14103 355 aaKnown RBP16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 PLA2G4EQ3MJ16 856 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 TRIQKQ629K1 86 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 PRCCQ92733 491 aaPredicted RBP16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 NMD3Q96D46 503 aaKnown RBP16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 PTCD3Q96EY7 689 aaKnown RBP16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 SNX3O60493 162 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 SASH3O75995 380 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 LRRN4Q8WUT4 740 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 GBA3Q9H227 469 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 PRDM8Q9NQV8 689 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 LTBP3Q9NS15 1303 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 MATN3O15232 486 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 ITPKBP27987 946 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 IGFALSP35858 605 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 PSMD7P51665 324 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 CSNK2BP67870 215 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 PDK4Q16654 411 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 C9orf64Q5T6V5 341 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 RSBN1Q5VWQ0 802 aaPredicted RBP16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 TMPRSS11BQ86T26 416 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 ZCCHC7Q8N3Z6 543 aaKnown RBP16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 TSC22D4Q9Y3Q8 395 aa16.21■□□□□ 0.19
PCDHA3-201ENST00000522353 STK16O75716 305 aa16.21■□□□□ 0.18
PCDHA3-201ENST00000522353 PRAMEF1O95521 474 aa16.21■□□□□ 0.18
PCDHA3-201ENST00000522353 PFKMP08237 780 aa16.21■□□□□ 0.18
PCDHA3-201ENST00000522353 IDH2P48735 452 aaKnown RBP16.21■□□□□ 0.18
PCDHA3-201ENST00000522353 ST13P50502 369 aaKnown RBP16.21■□□□□ 0.18
PCDHA3-201ENST00000522353 NRSN1Q8IZ57 195 aa16.21■□□□□ 0.18
PCDHA3-201ENST00000522353 PLD5Q8N7P1 536 aa16.21■□□□□ 0.18
PCDHA3-201ENST00000522353 SHDQ96IW2 340 aa16.21■□□□□ 0.18
PCDHA3-201ENST00000522353 MBOAT7Q96N66 472 aa16.21■□□□□ 0.18
PCDHA3-201ENST00000522353 TMEM175Q9BSA9 504 aa16.21■□□□□ 0.18
PCDHA3-201ENST00000522353 NTPCRQ9BSD7 190 aaKnown RBP16.21■□□□□ 0.18
PCDHA3-201ENST00000522353 SPAG4Q9NPE6 437 aa16.21■□□□□ 0.18
PCDHA3-201ENST00000522353 GGA2Q9UJY4 613 aa16.21■□□□□ 0.18
PCDHA3-201ENST00000522353 PKNOX1P55347 436 aa16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 RNASEH2BQ5TBB1 312 aaKnown RBP16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 SCIMPQ6UWF3 145 aa16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 OTOP3Q7RTS5 596 aa16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 OFCC1Q8IZS5 231 aa16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 TTC29Q8NA56 475 aaPredicted RBP16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 NETO2Q8NC67 525 aa16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 ST13P5Q8NFI4 369 aaPredicted RBP16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 NDRG1Q92597 394 aaKnown RBP16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 Q96MT0 163 aa16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 WRAP53Q9BUR4 548 aaKnown RBP16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 XPNPEP1Q9NQW7 623 aa16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 RFC2P35250 354 aa16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 BUD31P41223 144 aaPredicted RBP16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 SEC13P55735 322 aa16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 GBE1Q04446 702 aa16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 LAPTM5Q13571 262 aa16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 TTC23Q5W5X9 447 aa16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 FAM180AQ6UWF9 173 aa16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 ADAMTS15Q8TE58 950 aa16.2■□□□□ 0.18
PCDHA3-201ENST00000522353 LCN9Q8WX39 176 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms