RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 SLC35F3Q8IY50 421 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 CNTROBQ8N137 903 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 ADSSL1Q8N142 457 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 CLIP4Q8N3C7 705 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 ZBTB2Q8N680 514 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 HUS1BQ8NHY5 278 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 ERGIC1Q969X5 290 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 INTS12Q96CB8 462 aaKnown RBP3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 PABPC5Q96DU9 382 aaKnown RBP3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 METTL2AQ96IZ6 378 aaKnown RBP3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 THOC3Q96J01 351 aaKnown RBP3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 SLC41A2Q96JW4 573 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 TMEM68Q96MH6 324 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 IFIH1Q9BYX4 1025 aaKnown RBP3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 MKKSQ9NPJ1 570 aaPredicted RBP3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 DDX4Q9NQI0 724 aaKnown RBP3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 SLC6A13Q9NSD5 602 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 SMC4Q9NTJ3 1288 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 EHD2Q9NZN4 543 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 SELENONQ9NZV5 590 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 DLGAP2Q9P1A6 1054 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 KCNE2Q9Y6J6 123 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 CEPT1Q9Y6K0 416 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 STON1Q9Y6Q2 735 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 ATXN2Q99700 1313 aaKnown RBP3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 A2MP01023 1474 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 WDR7Q9Y4E6 1490 aa3.35□□□□□ -1.87
HMGB1P41-201ENST00000520234 ABCC2Q92887 1545 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 PREX2Q70Z35 1606 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 IQGAP3Q86VI3 1631 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 CDC42BPBQ9Y5S2 1711 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 LACTBL1A8MY62 500 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 J3KR12 359 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 DYNC1I1O14576 645 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 USO1O60763 962 aaKnown RBP3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 IPO7O95373 1038 aaKnown RBP3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 NGFRP08138 427 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 LAMP2P13473 410 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 ZNF182P17025 639 aaPredicted RBP3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 STX2P32856 288 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 ICAM3P32942 547 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 ARL3P36405 182 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 PIGAP37287 484 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 MMP14P50281 582 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 GEMIN4P57678 1058 aaKnown RBP3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 SORDQ00796 357 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 CSTF3Q12996 717 aaKnown RBP3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 MAMLD1Q13495 774 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 NAE1Q13564 534 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 KRT32Q14532 448 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 MAPRE1Q15691 268 aaKnown RBP3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 HAUS3Q68CZ6 603 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 FAM180BQ6P0A1 224 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 TSSK4Q6SA08 328 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 C4orf50Q6ZRC1 276 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 CLEC17AQ6ZS10 378 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 C1orf122Q6ZSJ8 110 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 CENPQQ7L2Z9 268 aaPredicted RBP3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 MTERF4Q7Z6M4 381 aaKnown RBP3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 FJX1Q86VR8 437 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 ZC3HC1Q86WB0 502 aaKnown RBP3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 TMEM116Q8NCL8 245 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 MAGEC3Q8TD91 643 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 SGCDQ92629 289 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 ZNF479Q96JC4 524 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 HARBI1Q96MB7 349 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 MEIS3Q99687 375 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 ZPBPQ9BS86 351 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 CCDC94Q9BW85 323 aaPredicted RBP3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 MUC13Q9H3R2 512 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 CHMP4BQ9H444 224 aaKnown RBP3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 KIF9Q9HAQ2 790 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 GRPEL1Q9HAV7 217 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 FBRSL1Q9HCM7 1045 aaKnown RBP3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 ABI3Q9P2A4 366 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 MKLN1Q9UL63 735 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 CDC14AQ9UNH5 594 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 PSAT1Q9Y617 370 aa3.34□□□□□ -1.87
HMGB1P41-201ENST00000520234 EIF3AQ14152 1382 aaKnown RBP3.34□□□□□ -1.88
HMGB1P41-201ENST00000520234 VWDEQ8N2E2 1590 aa3.34□□□□□ -1.88
HMGB1P41-201ENST00000520234 TRPM1Q7Z4N2 1603 aa3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 IGLV5-52A0A0A0MRZ9 124 aa3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 FAM237AA0A1B0GTK4 181 aa3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 CPED1A4D0V7 1026 aa3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 PI4KAP2A4QPH2 592 aa3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 PGPEP1LA6NFU8 196 aa3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 AKR1B15C9JRZ8 316 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 ZIC3O60481 467 aa3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 RNASEH2AO75792 299 aaKnown RBP3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 ACAA1P09110 424 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 MAOAP21397 527 aa3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 NFKBIAP25963 317 aa3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 PPP2R1AP30153 589 aa3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 HOXA11P31270 313 aaPredicted RBP3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 CCKARP32238 428 aa3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 RGS2P41220 211 aa3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 PEX5P50542 639 aa3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 METAP2P50579 478 aaKnown RBP eCLIP3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 NANOS2P60321 138 aaKnown RBP3.33□□□□□ -1.88
HMGB1P41-201ENST00000520234 SEC61A1P61619 476 aaKnown RBP3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms