RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 TMEM110Q86TL2 294 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 OR2T34Q8NGX1 318 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 OR2T3Q8NH03 318 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 SPPL2BQ8TCT7 592 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 LRTOMTQ8WZ04 291 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 HMCESQ96FZ2 354 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 SLC39A8Q9C0K1 460 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 ADGRE2Q9UHX3 823 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 TRIM17Q9Y577 477 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 RAI2Q9Y5P3 530 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 TEX264Q9Y6I9 313 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 NRXN3Q9Y4C0 1643 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 MYH11P35749 1972 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 OR51F1A6NGY5 319 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 CYP2A6P11509 494 aaPredicted RBP12.65□□□□□ -0.38
USP53-209ENST00000514665 ALFQ53S48 1182 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 TSTD2Q5T7W7 516 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 MFSD4BQ5TF39 518 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 IL23RQ5VWK5 629 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 IGDCC3Q8IVU1 814 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 RBFAQ8N0V3 343 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 OR52B2Q96RD2 323 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 EPB41L1Q9H4G0 881 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 RAD21L1Q9H4I0 556 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 MRPL17Q9NRX2 175 aaKnown RBP12.65□□□□□ -0.38
USP53-209ENST00000514665 IGSF9Q9P2J2 1179 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 GTF2A1LQ9UNN4 478 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 ARL5CA6NH57 179 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 ABLIM1O14639 778 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 PABPC1P11940 636 aaKnown RBP12.65□□□□□ -0.38
USP53-209ENST00000514665 EPORP19235 508 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 NR4A1P22736 598 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 ITPKAP23677 461 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 ITGA7Q13683 1181 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 SIM2Q14190 667 aaPredicted RBP12.65□□□□□ -0.38
USP53-209ENST00000514665 ANGPT1Q15389 498 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 TSNQ15631 228 aaKnown RBP12.65□□□□□ -0.38
USP53-209ENST00000514665 TBC1D21Q8IYX1 336 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 SLC9A7Q96T83 725 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 GPR88Q9GZN0 384 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.65□□□□□ -0.38
USP53-209ENST00000514665 UNC93B1Q9H1C4 597 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 SIX4Q9UIU6 781 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 CNTN6Q9UQ52 1028 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 SPACA6W5XKT8 324 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 ANKDD1BA6NHY2 528 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 EFCAB14O75071 495 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 SLC25A14O95258 325 aaPredicted RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 SLC1A2P43004 574 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 CXCR3P49682 368 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 ZNF280AP59817 542 aaPredicted RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 CLCQ05315 142 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 LIPEQ05469 1076 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 KLF1Q13351 362 aaPredicted RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 KRR1Q13601 381 aaKnown RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 PPM1LQ5SGD2 360 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 NCBP2-AS2Q69YL0 99 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 PNPT1Q8TCS8 783 aaKnown RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 FTHL17Q9BXU8 183 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 ABCB10Q9NRK6 738 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 EVLQ9UI08 416 aaPredicted RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 COPG1Q9Y678 874 aaKnown RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 PIPSLA2A3N6 862 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 FAM25AB3EWG3 89 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 FAM25CB3EWG5 89 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 FAM25GB3EWG6 89 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 CCNA2P20248 432 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 HSPA7P48741 367 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 GALK1P51570 392 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 YBEYP58557 167 aaPredicted RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 HNRNPDQ14103 355 aaKnown RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 IKBKEQ14164 716 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 NR1D2Q14995 579 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 USP41Q3LFD5 358 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 TIGD5Q53EQ6 642 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 CLEC20AQ6ZU45 233 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 EPHX4Q8IUS5 362 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 ZNF558Q96NG5 402 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 PPM1HQ9ULR3 514 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 OR6C75A6NL08 312 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 STX16-NPEPL1H3BU86 382 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 NFKBIEO00221 500 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 LIN7AO14910 233 aaPredicted RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 SEC24AO95486 1093 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 CNPP09543 421 aaKnown RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 NCK1P16333 377 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 TACR2P21452 398 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 KCNJ11Q14654 390 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 CYP2A13Q16696 494 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 C1orf220Q5T0J3 134 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 RASAL3Q86YV0 1011 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 CPNE9Q8IYJ1 553 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 HJURPQ8NCD3 748 aaPredicted RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 NLGN2Q8NFZ4 835 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 CENPIQ92674 756 aaPredicted RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 COL26A1Q96A83 441 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 VPS35Q96QK1 796 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 ACBD6Q9BR61 282 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 TTPALQ9BTX7 342 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 EBF2Q9HAK2 575 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms