RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ATG4AQ8WYN0 398 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 ERP44Q9BS26 406 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 ZZEF1O43149 2961 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 IGHV1OR15-9A0A0B4J2B8 117 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 PRLP01236 227 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 ENGP17813 658 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 RXRGP48443 463 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 DSC2Q02487 901 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 BTKQ06187 659 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 BNIP3Q12983 259 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 DEPDC4Q8N2C3 294 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 SPATA22Q8NHS9 363 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 FAM136AQ96C01 138 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 CSPG4P5Q96PW8 444 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 SEMA3CQ99985 751 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 NUF2Q9BZD4 464 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 TPK1Q9H3S4 243 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 KLHL8Q9P2G9 620 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 ITGB1BP2Q9UKP3 347 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 FZD10Q9ULW2 581 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 DNAJC16Q9Y2G8 782 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 SPTBP11277 2137 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 MUSKO15146 869 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 MTX2O75431 263 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 CCDC166P0CW27 439 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 GNSP15586 552 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 LSP1P33241 339 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 RPS9P46781 194 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 THOP1P52888 689 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 NNTQ13423 1086 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 SMU1Q2TAY7 513 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 PID1Q7Z2X4 250 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 HID1Q8IV36 788 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 MINDY1Q8N5J2 469 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 CCHCR1Q8TD31 782 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 JPH3Q8WXH2 748 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 PSKH2Q96QS6 385 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 RALYQ9UKM9 306 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 SNTNA6NMZ2 147 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 C1QTNF3-AMACRE9PGA6 284 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 H0YC42 278 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 BCAT2O15382 392 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 MT-CYBP00156 380 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 CTSLP07711 333 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 PBX1P40424 430 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 TNFRSF4P43489 277 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 RPS14P62263 151 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 CYLC2Q14093 348 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 C9orf64Q5T6V5 341 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 PLEKHA7Q6IQ23 1121 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 PPP4R4Q6NUP7 873 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 RFLNAQ6ZTI6 216 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 CLVS1Q8IUQ0 354 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 LILRB2Q8N423 598 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 IPMKQ8NFU5 416 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 PLSCR2Q9NRY7 297 aa7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 MTRF1LQ9UGC7 380 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 ARID1BQ8NFD5 2236 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-219ENST00000514096 EDDM13A0A1B0GTR0 161 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 CTAGE9A4FU28 777 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 POM121BA6NF01 834 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 ARHGAP42A6NI28 874 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 RHOBTB1O94844 696 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 ATP1A1P05023 1023 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 POU2F2P09086 479 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 MSLNQ13421 630 aaPredicted RBP7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 ELAVL3Q14576 367 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 CNGA3Q16281 694 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 MARC1Q5VT66 337 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 FOXR2Q6PJQ5 311 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 STRADAQ7RTN6 431 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 ZNF761Q86XN6 746 aaPredicted RBP7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 PLPP6Q8IY26 295 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 ANKK1Q8NFD2 765 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 OR2A12Q8NGT7 310 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 RAB3IL1Q8TBN0 382 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 C1orf54Q8WWF1 131 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 TSACCQ96A04 125 aaPredicted RBP7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 HSPBAP1Q96EW2 488 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 NSMCE3Q96MG7 304 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 RBM15Q96T37 977 aaKnown RBP eCLIP7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 SH3GL2Q99962 352 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 HEPHQ9BQS7 1158 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 OSGEPL1Q9H4B0 414 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 SCUBE2Q9NQ36 999 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 FKBP14Q9NWM8 211 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 TTC7AQ9ULT0 858 aaPredicted RBP7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 PCDHGA2Q9Y5H1 932 aa7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 MAGED1Q9Y5V3 778 aaPredicted RBP7.9□□□□□ -1.15
LIMCH1-219ENST00000514096 SHROOM3Q8TF72 1996 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 MTA2O94776 668 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 MYZAPP0CAP1 466 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 GZMAP12544 262 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 L1CAMP32004 1257 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 HNF1BP35680 557 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 CD86P42081 329 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 GABRB2P47870 512 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 NAA20P61599 178 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 SNRPD1P62314 119 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 ENPEPQ07075 957 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms