RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 OR2M4Q96R27 311 aa20.23■□□□□ 0.83
SQSTM1-215ENST00000514093 SP110Q9HB58 689 aa20.23■□□□□ 0.83
SQSTM1-215ENST00000514093 KCTD3Q9Y597 815 aa20.23■□□□□ 0.83
SQSTM1-215ENST00000514093 RPS6KL1Q9Y6S9 549 aa20.23■□□□□ 0.83
SQSTM1-215ENST00000514093 MKRN2OSH3BPM6 223 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 DFFAO00273 331 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 VPS4BO75351 444 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 UNGP13051 313 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 TNFAIP3P21580 790 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 LHCGRP22888 699 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 MAN1A1P33908 653 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 STAT5AP42229 794 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 MAPK9P45984 424 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 NSFP46459 744 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 FASLGP48023 281 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 ZNF143P52747 638 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 COPB1P53618 953 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 RPL7AP62424 266 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 NFATC2Q13469 925 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 TCTN3Q6NUS6 607 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 RFLNAQ6ZTI6 216 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 TMEM135Q86UB9 458 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 TRIM74Q86UV6 250 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 CCDC13Q8IYE1 715 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 CBARPQ8N350 705 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 ZPBPQ9BS86 351 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 TRIT1Q9H3H1 467 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 PRDM8Q9NQV8 689 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 CD84Q9UIB8 345 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 VPS4AQ9UN37 437 aa20.22■□□□□ 0.83
SQSTM1-215ENST00000514093 SIGLEC16A6NMB1 481 aa20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 POLR1CO15160 346 aaPredicted RBP20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 DLGAP3O95886 979 aa20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 RNF224P0DH78 156 aa20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 DLSTP36957 453 aa20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 KLK7P49862 253 aa20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 CAPRIN2Q6IMN6 1127 aaKnown RBP20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 WDR74Q6RFH5 385 aaPredicted RBP20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 TSPAN33Q86UF1 283 aa20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 FAM114A1Q8IWE2 563 aa20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 ARHGAP12Q8IWW6 846 aa20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 SFRP1Q8N474 314 aa20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 VPS16Q9H269 839 aa20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 DACH1Q9UI36 760 aa20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 PCDHB3Q9Y5E6 796 aa20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 CREBBPQ92793 2442 aa20.21■□□□□ 0.83
SQSTM1-215ENST00000514093 A1L4Q6 167 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 TTLL8A6PVC2 850 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 EEF2KO00418 725 aaKnown RBP20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 CPP00450 1065 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 PDGFAP04085 211 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 ZNF28P17035 718 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 GPR1P46091 355 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 AP1S1P61966 158 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 SLC10A7Q0GE19 358 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 CA9Q16790 459 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 CRTC2Q53ET0 693 aaPredicted RBP20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 PYCR3Q53H96 274 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 TP53INP2Q8IXH6 220 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 ESX1Q8N693 406 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 C3orf20Q8ND61 904 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 SCARF2Q96GP6 870 aaPredicted RBP20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 MCEEQ96PE7 176 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 GANQ9H2C0 597 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 TLK1Q9UKI8 766 aa20.2■□□□□ 0.82
SQSTM1-215ENST00000514093 NPIPB15A6NHN6 443 aaPredicted RBP20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 ENO4A6NNW6 628 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 HTRA2O43464 458 aaPredicted RBP20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 SEMA7AO75326 666 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 KATNA1O75449 491 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 SOD1P00441 154 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 NOP2P46087 812 aaKnown RBP20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 GSCP56915 257 aaPredicted RBP20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 HHEXQ03014 270 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 DNAJC24Q6P3W2 148 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 TRIM72Q6ZMU5 477 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 NPWQ8N729 165 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 SSC4DQ8WTU2 575 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 DHX35Q9H5Z1 703 aaKnown RBP20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 NLRC4Q9NPP4 1024 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 KCTD5Q9NXV2 234 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 DONSONQ9NYP3 566 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 CROTQ9UKG9 612 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 AP4E1Q9UPM8 1137 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 PRKAB1Q9Y478 270 aa20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 PCYT1BQ9Y5K3 369 aaPredicted RBP20.19■□□□□ 0.82
SQSTM1-215ENST00000514093 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.18■□□□□ 0.82
SQSTM1-215ENST00000514093 TCRBV5S1A1TA0A578 114 aa20.18■□□□□ 0.82
SQSTM1-215ENST00000514093 DAPK3O43293 454 aa20.18■□□□□ 0.82
SQSTM1-215ENST00000514093 CALB1P05937 261 aa20.18■□□□□ 0.82
SQSTM1-215ENST00000514093 CYP2A6P11509 494 aaPredicted RBP20.18■□□□□ 0.82
SQSTM1-215ENST00000514093 CTPS1P17812 591 aa20.18■□□□□ 0.82
SQSTM1-215ENST00000514093 SOX5P35711 763 aa20.18■□□□□ 0.82
SQSTM1-215ENST00000514093 AIF1P55008 147 aa20.18■□□□□ 0.82
SQSTM1-215ENST00000514093 POLR2FP61218 127 aaKnown RBP20.18■□□□□ 0.82
SQSTM1-215ENST00000514093 OGDHQ02218 1023 aa20.18■□□□□ 0.82
SQSTM1-215ENST00000514093 FOXM1Q08050 763 aa20.18■□□□□ 0.82
SQSTM1-215ENST00000514093 IL10RBQ08334 325 aa20.18■□□□□ 0.82
SQSTM1-215ENST00000514093 RFTN1Q14699 578 aaPredicted RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms