RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 MEI1Q5TIA1 1274 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 CDCP2Q5VXM1 449 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 ZCCHC8Q6NZY4 707 aaKnown RBP9.68□□□□□ -0.86
RNF4-221ENST00000513643 ENPP7Q6UWV6 458 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 RANBP10Q6VN20 620 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 TMPRSS12Q86WS5 348 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 HEATR4Q86WZ0 1026 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 C17orf82Q86X59 251 aaPredicted RBP9.68□□□□□ -0.86
RNF4-221ENST00000513643 NRROSQ86YC3 692 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.68□□□□□ -0.86
RNF4-221ENST00000513643 KDF1Q8NAX2 398 aaPredicted RBP9.68□□□□□ -0.86
RNF4-221ENST00000513643 LPCAT1Q8NF37 534 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 ATL2Q8NHH9 583 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 PTCD2Q8WV60 388 aaKnown RBP9.68□□□□□ -0.86
RNF4-221ENST00000513643 TSACCQ96A04 125 aaPredicted RBP9.68□□□□□ -0.86
RNF4-221ENST00000513643 HAUS1Q96CS2 278 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 PDXPQ96GD0 296 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 CNTNAP3BQ96NU0 1288 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 SRPK1Q96SB4 655 aaKnown RBP9.68□□□□□ -0.86
RNF4-221ENST00000513643 CNTNAP3Q9BZ76 1288 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 CDH19Q9H159 772 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 WDR26Q9H7D7 661 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 SEPT10Q9P0V9 454 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 R3HDM2Q9Y2K5 976 aaKnown RBP9.68□□□□□ -0.86
RNF4-221ENST00000513643 TTLL3Q9Y4R7 772 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 SPO11Q9Y5K1 396 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 ST14Q9Y5Y6 855 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 CACNA1BQ00975 2339 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 ZFHX4Q86UP3 3567 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 PKD1L2Q7Z442 2459 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 CHD6Q8TD26 2715 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 AURKAO14965 403 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 ZNF189O75820 626 aaPredicted RBP9.67□□□□□ -0.86
RNF4-221ENST00000513643 TNFP01375 233 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 PYGLP06737 847 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 IVLP07476 585 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 ALPPL2P10696 532 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 HMGCLP35914 325 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 EPHB1P54762 984 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 DCDC1P59894 354 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 EIF3EP60228 445 aaKnown RBP9.67□□□□□ -0.86
RNF4-221ENST00000513643 MPP3Q13368 585 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 C1orf61Q13536 156 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 ELOCQ15369 112 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 C6orf132Q5T0Z8 1188 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 FAXCQ5TGI0 409 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 DHRS13Q6UX07 377 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 PID1Q7Z2X4 250 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 LYSMD3Q7Z3D4 306 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 SLC35F3Q8IY50 421 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 TTC30BQ8N4P2 665 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 UBL4BQ8N7F7 174 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 TTC13Q8NBP0 860 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 GPR26Q8NDV2 337 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 GPR156Q8NFN8 814 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 GPBAR1Q8TDU6 330 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 LMX1AQ8TE12 382 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 AP2M1Q96CW1 435 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 RTP4Q96DX8 246 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 SLC13A1Q9BZW2 595 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 GBA3Q9H227 469 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 FAM83DQ9H4H8 585 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 ZFYVE1Q9HBF4 777 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 ARNT2Q9HBZ2 717 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 MRPL40Q9NQ50 206 aaKnown RBP9.67□□□□□ -0.86
RNF4-221ENST00000513643 TRNAU1APQ9NX07 287 aaKnown RBP9.67□□□□□ -0.86
RNF4-221ENST00000513643 NCKIPSDQ9NZQ3 722 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 KLQ9UEF7 1012 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 GUCA1BQ9UMX6 200 aa9.67□□□□□ -0.86
RNF4-221ENST00000513643 PTPRBP23467 1997 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 LRP4O75096 1905 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 RP1P56715 2156 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 C1orf232A0A0U1RR37 186 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 PRSS38A1L453 326 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 GOLGA8CPA6NN73 597 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 FADS2P1A8MWK0 482 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 C1QTNF9BB2RNN3 333 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 H7C0C1 242 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 FFAR2O15552 330 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 PMPCBO75439 489 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 PROS1P07225 676 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 CCDC175P0C221 793 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 C1QTNF9P0C862 333 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 MYF5P13349 255 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 CETN2P41208 172 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 ATP5OP48047 213 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 E2F1Q01094 437 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 INSM1Q01101 510 aaPredicted RBP9.66□□□□□ -0.86
RNF4-221ENST00000513643 GALNT3Q14435 633 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 SIX1Q15475 284 aaPredicted RBP9.66□□□□□ -0.86
RNF4-221ENST00000513643 OASLQ15646 514 aaKnown RBP9.66□□□□□ -0.86
RNF4-221ENST00000513643 SLC1A5Q15758 541 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 DEFB133Q30KQ1 61 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 SIRPB2Q5JXA9 342 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 ANKRD20A2Q5SQ80 823 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 ANKRD20A1Q5TYW2 823 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 ANKRD20A3Q5VUR7 823 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 DENND2CQ68D51 928 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 KCTD11Q693B1 232 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 DENND5AQ6IQ26 1287 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms