RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 USP10Q14694 798 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 PDK2Q15119 407 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 WSCD2Q2TBF2 565 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SLC35F1Q5T1Q4 408 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 RC3H1Q5TC82 1133 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 FAXCQ5TGI0 409 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 IGFN1Q86VF2 1251 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MFSD6LQ8IWD5 586 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 FOXRED2Q8IWF2 684 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ZC3H7AQ8IWR0 971 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 FMR1NBQ8N0W7 255 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 CMTR1Q8N1G2 835 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 CENPSQ8N2Z9 138 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SAMD12Q8N8I0 201 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ZNF557Q8N988 423 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 CDC26Q8NHZ8 85 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 NPLOC4Q8TAT6 608 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 TRIM43Q96BQ3 446 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 MOCOSQ96EN8 888 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 DCUN1D1Q96GG9 259 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 RADILQ96JH8 1075 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PTCHD1Q96NR3 888 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CNTNAP3BQ96NU0 1288 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 NODALQ96S42 347 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 WRNIP1Q96S55 665 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 EGFL8Q99944 293 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 VRK1Q99986 396 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 CORO1BQ9BR76 489 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 THUMPD3Q9BV44 507 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 TBC1D10AQ9BXI6 508 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 NELFAQ9H3P2 528 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 USP29Q9HBJ7 922 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 LRRC4Q9HBW1 653 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SDHAF2Q9NX18 166 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PTGFRNQ9P2B2 879 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MTRRQ9UBK8 725 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 TUBE1Q9UJT0 475 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PCDHGC3Q9UN70 934 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 DNAJC16Q9Y2G8 782 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PADI2Q9Y2J8 665 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 FIS1Q9Y3D6 152 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ATG4BQ9Y4P1 393 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CSADQ9Y600 493 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 HSPE1-MOB4S4R3N1 261 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 WNK3Q9BYP7 1800 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SBF2Q86WG5 1849 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 A0A075B6Q4 140 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ASB14A6NK59 587 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PDXKO00764 312 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SGTAO43765 313 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 FADS1O60427 444 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PLA2G6O60733 806 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CILPO75339 1184 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ENTPD6O75354 484 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CYP7B1O75881 506 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 KCNH1O95259 989 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 FTH1P02794 183 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 RARBP10826 455 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 POLR2CP19387 275 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 ENDOUP21128 410 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 DRD4P21917 467 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MATN1P21941 496 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MUTP22033 750 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 DNAJB1P25685 340 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MAOBP27338 520 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CASP1P29466 404 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SDC4P31431 198 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 BTDP43251 543 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SRP9P49458 86 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 UGT2B15P54855 530 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 TAS2R43P59537 309 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CRADDP78560 199 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PTSQ03393 145 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 GLO1Q04760 184 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 FAAP100Q0VG06 881 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CHAF1BQ13112 559 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 DRAP1Q14919 205 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 TEAD4Q15561 434 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ZNF529Q6P280 563 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 RPL22L1Q6P5R6 122 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 TMED4Q7Z7H5 227 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 DPPA2Q7Z7J5 298 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ADGRD2Q7Z7M1 963 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CACUL1Q86Y37 369 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SLC13A5Q86YT5 568 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 C12orf45Q8N5I9 185 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 NDNFQ8TB73 568 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ANKS1AQ92625 1134 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MAP4K1Q92918 833 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MOAP1Q96BY2 351 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CENPNQ96H22 339 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 DIRAS2Q96HU8 199 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 REXO5Q96IC2 774 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 ZNF570Q96NI8 536 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PLEKHF1Q96S99 279 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 GAD1Q99259 594 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PHOX2BQ99453 314 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PKP4Q99569 1192 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 APBA2Q99767 749 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 TBL1YQ9BQ87 522 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms