RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 KLHDC10Q6PID8 442 aa16.08■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CYP2R1Q6VVX0 501 aa16.08■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 RETREG3Q86VR2 466 aa16.08■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SLC29A1Q99808 456 aa16.08■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 TSEN34Q9BSV6 310 aaKnown RBP16.08■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ZYG11BQ9C0D3 744 aa16.08■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 UXTQ9UBK9 157 aaPredicted RBP16.08■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PPP6CO00743 305 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 B4GALT3O60512 393 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 GJB3O75712 270 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SRP72O76094 671 aaKnown RBP16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CD1DP15813 335 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 FDXRP22570 491 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CDH13P55290 713 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SH3BP2P78314 561 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 TXNL4AP83876 142 aaKnown RBP16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SLC39A12Q504Y0 691 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 FAM126BQ8IXS8 530 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ZFP28Q8NHY6 868 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 C19orf60Q96EN9 201 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 TBATAQ96M53 351 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SLC39A3Q9BRY0 314 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 AKTIPQ9H8T0 292 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PTTG2Q9NZH5 202 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PADI4Q9UM07 663 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SCML2Q9UQR0 700 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CRYL1Q9Y2S2 319 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 XIRP2A4UGR9 3374 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ITGB8P26012 769 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 TBX4P57082 545 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 HERVK_113P63132 956 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ACVR1Q04771 509 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 YWHAHQ04917 246 aaPredicted RBP16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 TMED1Q13445 227 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PTPRCAPQ14761 206 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 MTX3Q5HYI7 312 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PITRM1Q5JRX3 1037 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SAMD4BQ5PRF9 694 aaKnown RBP16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 MON1AQ86VX9 555 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 OR52K2Q8NGK3 314 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 IGSF8Q969P0 613 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 LRCH3Q96II8 777 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 MPP4Q96JB8 637 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 UROC1Q96N76 676 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ERVK-6Q9BXR3 956 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 RGS18Q9NS28 235 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 MAP10Q9P2G4 905 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CNOT6Q9ULM6 557 aaKnown RBP16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 DNAJC15Q9Y5T4 150 aa16.07■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ALPK3Q96L96 1907 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 IGLV3-10A0A075B6K4 115 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CDK14O94921 469 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 FGFR3P22607 806 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PAX3P23760 479 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SLC7A2P52569 658 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 USP46P62068 366 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PRAMEP78395 509 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SEMA3AQ14563 771 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 AMIGO2Q86SJ2 522 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CLYBLQ8N0X4 340 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 FAM110BQ8TC76 370 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ADAM2Q99965 735 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 GPATCH1Q9BRR8 931 aaKnown RBP16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 C11orf49Q9H6J7 331 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SP110Q9HB58 689 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 TMEM165Q9HC07 324 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ABI2Q9NYB9 513 aaPredicted RBP16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PCDHB8Q9UN66 801 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PTGDR2Q9Y5Y4 395 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 LRRC14BA6NHZ5 514 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SLC4A1P02730 911 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 FGF4P08620 206 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 COL6A1P12109 1028 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PSMC3P17980 439 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 LPIN1Q14693 890 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 MBTPS1Q14703 1052 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 OR4D1Q15615 310 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 DDR2Q16832 855 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CARM1Q86X55 608 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PHYKPLQ8IUZ5 450 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 RIN3Q8TB24 985 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 OCEL1Q9H607 264 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 GIMAP2Q9UG22 337 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SNX13Q9Y5W8 968 aa16.06■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SIX3O95343 332 aaPredicted RBP16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 GOT2P00505 430 aaKnown RBP16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SLC2A3P11169 496 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CKBP12277 381 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 MTHFD2P13995 350 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ATP6V1B2P21281 511 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SUOXP51687 545 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 FOXA1P55317 472 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 IRAK1BP1Q5VVH5 260 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 FBXL22Q6P050 247 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 B3GNT6Q6ZMB0 384 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PTGR2Q8N8N7 351 aaPredicted RBP16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 DDI1Q8WTU0 396 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ROPN1LQ96C74 230 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 YIPF2Q9BWQ6 316 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms