RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 VPS45Q9NRW7 570 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 EBF1Q9UH73 591 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 PRSS51A0A1B0GVH4 220 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 MTMR11A4FU01 709 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 MRASO14807 208 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 SLC2A3P11169 496 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 RGRP47804 291 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 PFKPQ01813 784 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 SERINC3Q13530 473 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 ZNF235Q14590 738 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 MAP7D1Q3KQU3 841 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 HMBOX1Q6NT76 420 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 ZBTB49Q6ZSB9 765 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 SPPL2BQ8TCT7 592 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 CYGBQ8WWM9 190 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 GLT1D1Q96MS3 346 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 ARNT2Q9HBZ2 717 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 PCDH10Q9P2E7 1040 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 VTI1BQ9UEU0 232 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 USP22Q9UPT9 525 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 CCDC162PA2VCL2 907 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 NCF1BA6NI72 391 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 NCF1CA8MVU1 366 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 ADAM12O43184 909 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 MTHFD1P11586 935 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 NCF1P14598 390 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 SLC6A4P31645 630 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 RPS24P62847 133 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 HPCAP84074 193 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 IKBKEQ14164 716 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 TRIP4Q15650 581 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 ANKDD1AQ495B1 522 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 PABPC1LQ4VXU2 614 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 FAM26DQ5JW98 314 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 RNF180Q86T96 592 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 LCA5Q86VQ0 697 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 CLVS1Q8IUQ0 354 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 CACNA2D2Q9NY47 1150 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 CNOT6Q9ULM6 557 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 FRMPD3Q5JV73 1810 aa16.5■□□□□ 0.23
CCDC88B-210ENST00000494566 UBA6A0AVT1 1052 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 MROH6A6NGR9 719 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 NPHS1O60500 1241 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 TSPAN3O60637 253 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 TRMUO75648 421 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 CLCN5P51795 746 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 PRKAA2P54646 552 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 NRG1Q02297 640 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 CCDC117Q8IWD4 279 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 DDIASQ8IXT1 998 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 DBF4BQ8NFT6 615 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 FUBP3Q96I24 572 aaKnown RBP eCLIP16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 NSUN5Q96P11 429 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 MRPS26Q9BYN8 205 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 ZNF711Q9Y462 761 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 TRIM38O00635 465 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 AOC2O75106 756 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 EOMESO95936 686 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 SLC11A1P49279 550 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 MYBPC3Q14896 1274 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 ISCA2Q86U28 154 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 CALML6Q8TD86 181 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 UBXN10Q96LJ8 280 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 HBEGFQ99075 208 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 TLR8Q9NR97 1041 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 PTTG2Q9NZH5 202 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 RAB26Q9ULW5 256 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 FAM50BQ9Y247 325 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 IGLV3-10A0A075B6K4 115 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 UBXN8O00124 270 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 GJB5O95377 273 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 ATP6V1B2P21281 511 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 CDKN1CP49918 316 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 PSMD7P51665 324 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 FOXA1P55317 472 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 TRIM25Q14258 630 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 PLCL1Q15111 1095 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 KCTD21Q4G0X4 260 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 KLC3Q6P597 504 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 CBR4Q8N4T8 237 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 CPSF7Q8N684 471 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 ADCY4Q8NFM4 1077 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 FBXL20Q96IG2 436 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 RBM38Q9H0Z9 239 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 GSTO2Q9H4Y5 243 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 MARCH5Q9NX47 278 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 CDC14AQ9UNH5 594 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 CEPT1Q9Y6K0 416 aa16.49■□□□□ 0.23
CCDC88B-210ENST00000494566 A0A0J9YVX5 310 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 H3BMM5 538 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 CDH2P19022 906 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 TACR2P21452 398 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 ARL1P40616 181 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 SGSHP51688 502 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 ADARP55265 1226 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 TIAL1Q01085 375 aaKnown RBP eCLIP16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 TCTN1Q2MV58 587 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 KIAA0408Q6ZU52 694 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 POLR1EQ9GZS1 481 aaKnown RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms