RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 YDJCA8MPS7 323 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 IDH3BO43837 385 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 ALPLP05186 524 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 GJB1P08034 283 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 PTPN3P26045 913 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 CASP2P42575 452 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 CLK3P49761 638 aaKnown RBP11.69□□□□□ -0.54
HDAC4-210ENST00000493582 ALDH3A2P51648 485 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 CDH13P55290 713 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 PPP1R8Q12972 351 aaKnown RBP11.69□□□□□ -0.54
HDAC4-210ENST00000493582 DGCR6Q14129 220 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 AASDHQ4L235 1098 aaPredicted RBP11.69□□□□□ -0.54
HDAC4-210ENST00000493582 JADE1Q6IE81 842 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 RBM23Q86U06 439 aaKnown RBP11.69□□□□□ -0.54
HDAC4-210ENST00000493582 LYSMD2Q8IV50 215 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 SLC22A15Q8IZD6 547 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 HS3ST5Q8IZT8 346 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 LRRC71Q8N4P6 559 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 PSD4Q8NDX1 1056 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 PIK3C3Q8NEB9 887 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 OR13J1Q8NGT2 312 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 TMBIM1Q969X1 311 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 MLPHQ9BV36 600 aaPredicted RBP11.69□□□□□ -0.54
HDAC4-210ENST00000493582 C2orf40Q9H1Z8 148 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 MRGBPQ9NV56 204 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 NUDT5Q9UKK9 219 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 SCAF8Q9UPN6 1271 aaKnown RBP11.69□□□□□ -0.54
HDAC4-210ENST00000493582 PCDHA9Q9Y5H5 950 aa11.69□□□□□ -0.54
HDAC4-210ENST00000493582 LACTBL1A8MY62 500 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 TTC34A8MYJ7 566 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 PPP6CO00743 305 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 IPO13O94829 963 aaKnown RBP11.68□□□□□ -0.54
HDAC4-210ENST00000493582 LRIG2O94898 1065 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 MFN2O95140 757 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 LCP1P13796 627 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 CASP3P42574 277 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 TRPC1P48995 793 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 PPP5CP53041 499 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 EMX1Q04741 257 aaPredicted RBP11.68□□□□□ -0.54
HDAC4-210ENST00000493582 CD47Q08722 323 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 CDC20Q12834 499 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 GRB7Q14451 532 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 PSMD5Q16401 504 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 DESI1Q6ICB0 168 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 LAIR2Q6ISS4 152 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 REM2Q8IYK8 340 aaPredicted RBP11.68□□□□□ -0.54
HDAC4-210ENST00000493582 RHOXF1Q8NHV9 184 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 NDRG1Q92597 394 aaKnown RBP11.68□□□□□ -0.54
HDAC4-210ENST00000493582 HDAC2Q92769 488 aaKnown RBP11.68□□□□□ -0.54
HDAC4-210ENST00000493582 HPDLQ96IR7 371 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 SMOC2Q9H3U7 446 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 MAGEE1Q9HCI5 957 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 IL37Q9NZH6 218 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 UGT2A1Q9Y4X1 527 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 MAFBQ9Y5Q3 323 aaPredicted RBP11.68□□□□□ -0.54
HDAC4-210ENST00000493582 ZNF99A8MXY4 864 aaPredicted RBP11.68□□□□□ -0.54
HDAC4-210ENST00000493582 UPK1AO00322 258 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 RAD51BO15315 384 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 XPNPEP2O43895 674 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 CCNKO75909 580 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 SUPT7LO94864 414 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 GSNP06396 782 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 PCMT1P22061 227 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 DAG1Q14118 895 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 STEAP3Q658P3 488 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 STRADAQ7RTN6 431 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 DCP2Q8IU60 420 aaKnown RBP11.68□□□□□ -0.54
HDAC4-210ENST00000493582 GOLM1Q8NBJ4 401 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 LEMD2Q8NC56 503 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 ATL1Q8WXF7 558 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 TMEM125Q96AQ2 219 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 C19orf60Q96EN9 201 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 TMEM39BQ9GZU3 492 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 RPF1Q9H9Y2 349 aaKnown RBP11.68□□□□□ -0.54
HDAC4-210ENST00000493582 FAM118AQ9NWS6 357 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 BOLA1Q9Y3E2 137 aa11.68□□□□□ -0.54
HDAC4-210ENST00000493582 GABARAPO95166 117 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 PRKCAP17252 672 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 ENDOUP21128 410 aaKnown RBP11.67□□□□□ -0.54
HDAC4-210ENST00000493582 SERPINB10P48595 397 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 DNAJB13P59910 316 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 PITX1P78337 314 aaPredicted RBP11.67□□□□□ -0.54
HDAC4-210ENST00000493582 TTC23LQ6PF05 361 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 SPATC1Q76KD6 591 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 CCDC103Q8IW40 242 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 C7orf31Q8N865 590 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 PAPD5Q8NDF8 572 aaKnown RBP11.67□□□□□ -0.54
HDAC4-210ENST00000493582 RPL3LQ92901 407 aaKnown RBP11.67□□□□□ -0.54
HDAC4-210ENST00000493582 C11orf84Q9BUA3 381 aaPredicted RBP11.67□□□□□ -0.54
HDAC4-210ENST00000493582 BTBD2Q9BX70 525 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 NT5C1AQ9BXI3 368 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 AMBRA1Q9C0C7 1298 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 SP140LQ9H930 580 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 BBIP1A8MTZ0 92 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 INO80B-WBP1J3KQ70 363 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 M0QX08 132 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 EIF2DP41214 584 aaKnown RBP11.67□□□□□ -0.54
HDAC4-210ENST00000493582 MAP2K4P45985 399 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 NFYCQ13952 458 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 PRMT9Q6P2P2 845 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms