RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 SEPT10Q9P0V9 454 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 CACNG4Q9UBN1 327 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 CLIC4Q9Y696 253 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 ANXA2P2A6NMY6 339 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 H0YIN7 160 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 VCYO14598 125 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 OR52Z1P0C646 297 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 TCEA1P23193 301 aaKnown RBP4.7□□□□□ -1.66
VPS13A-212ENST00000493341 YPEL5P62699 121 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 CBX3Q13185 183 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 PGM5Q15124 567 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 PNLIPRP3Q17RR3 467 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 TEX38Q6PEX7 206 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 HAUS6Q7Z4H7 955 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 ERC1Q8IUD2 1116 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 LRRC56Q8IYG6 542 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-212ENST00000493341 VCPIP1Q96JH7 1222 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 ZNF570Q96NI8 536 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 TMEM237Q96Q45 408 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 PI4K2AQ9BTU6 479 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 KCNK15Q9H427 330 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 MVB12BQ9H7P6 319 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 MID1IP1Q9NPA3 183 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 DDX4Q9NQI0 724 aaKnown RBP4.7□□□□□ -1.66
VPS13A-212ENST00000493341 TAS2R14Q9NYV8 317 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 LARSQ9P2J5 1176 aaKnown RBP4.7□□□□□ -1.66
VPS13A-212ENST00000493341 DNAJB4Q9UDY4 337 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 FBXW11Q9UKB1 542 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 TMCC3Q9ULS5 477 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 LIPT1Q9Y234 373 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 WBP11Q9Y2W2 641 aaKnown RBP4.7□□□□□ -1.66
VPS13A-212ENST00000493341 PCDHGA5Q9Y5G8 931 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 KAT6AQ92794 2004 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 ARHGEF40Q8TER5 1519 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 TRBV5-7A0A0A0MS05 114 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 A0A1W2PRV1 198 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 HTR3EA5X5Y0 456 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 INO80B-WBP1J3KQ70 363 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 INPPL1O15357 1258 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 DAB1O75553 588 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 RGS11O94810 467 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 SLC4A1P02730 911 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 GBAP04062 536 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 HKR1P10072 659 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 UNGP13051 313 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-212ENST00000493341 HPDP32754 393 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-212ENST00000493341 CRKLP46109 303 aaKnown RBP4.7□□□□□ -1.66
VPS13A-212ENST00000493341 BLOC1S1P78537 153 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 IL1RL1Q01638 556 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 PPIGQ13427 754 aaKnown RBP eCLIP4.7□□□□□ -1.664e-7■□□□□ 10.9
VPS13A-212ENST00000493341 ANKRD20A4Q4UJ75 823 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 PARP10Q53GL7 1025 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 ANKRD20A8PQ5CZ79 823 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 ANKRD20A2Q5SQ80 823 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 LY6G5CQ5SRR4 150 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 TSTD2Q5T7W7 516 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 ANKRD20A1Q5TYW2 823 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 ANKRD20A3Q5VUR7 823 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 GBP6Q6ZN66 633 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 LINC00696Q6ZRV3 163 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 DPPA4Q7L190 304 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 DENND6AQ8IWF6 608 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 WDR63Q8IWG1 891 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 OR10S1Q8NGN2 331 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 MSI2Q96DH6 328 aaKnown RBP4.7□□□□□ -1.66
VPS13A-212ENST00000493341 HES6Q96HZ4 224 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 ACOX2Q99424 681 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 NOL11Q9H8H0 719 aaKnown RBP4.7□□□□□ -1.66
VPS13A-212ENST00000493341 PIH1D3Q9NQM4 214 aaKnown RBP4.7□□□□□ -1.66
VPS13A-212ENST00000493341 ABCB8Q9NUT2 735 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 CISD1Q9NZ45 108 aaKnown RBP4.7□□□□□ -1.66
VPS13A-212ENST00000493341 SALL3Q9BXA9 1300 aa4.7□□□□□ -1.66
VPS13A-212ENST00000493341 C17orf102A2RUQ5 167 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 CPED1A4D0V7 1026 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 TMEM202A6NGA9 273 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 SMIM22K7EJ46 135 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 PPFIA2O75334 1257 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 ZFYP08048 801 aaPredicted RBP4.69□□□□□ -1.66
VPS13A-212ENST00000493341 VPREB1P12018 145 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 P4HA1P13674 534 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 PRLRP16471 622 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 PCGF2P35227 344 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 RBPJQ06330 500 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 MZT1Q08AG7 82 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 RPA4Q13156 261 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 LASP1Q14847 261 aaKnown RBP4.69□□□□□ -1.66
VPS13A-212ENST00000493341 ISM2Q6H9L7 571 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 LINGO2Q7L985 606 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 ADIPOR2Q86V24 386 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 LMNTD2Q8IXW0 634 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 HORMAD2Q8N7B1 307 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 ATAD1Q8NBU5 361 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 MCPH1Q8NEM0 835 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 SEPT1Q8WYJ6 367 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 SNAPC3Q92966 411 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 EGLN2Q96KS0 407 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 RUNDC3BQ96NL0 473 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 DACH2Q96NX9 599 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 DDOQ99489 341 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 ZCCHC4Q9H5U6 513 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms