RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 LRRC3Q9BY71 257 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 TFB2MQ9H5Q4 396 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 CDH22Q9UJ99 828 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 LSM7Q9UK45 103 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 RPSAP08865 295 aaKnown RBP21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 CTSAP10619 480 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 SESN3P58005 492 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 HERVK_113P63132 956 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 SLC34A1Q06495 639 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 PAQR3Q6TCH7 311 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 MYLK4Q86YV6 388 aaPredicted RBP21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 MFN1Q8IWA4 741 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 APCDD1Q8J025 514 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 MAB21L3Q8N8X9 362 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 RP9Q8TA86 221 aaKnown RBP21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 DTX3LQ8TDB6 740 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 MRPS31Q92665 395 aaKnown RBP21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 ATOH8Q96SQ7 321 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 ERVK-6Q9BXR3 956 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 CCDC68Q9H2F9 335 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 MEAF6Q9HAF1 191 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 SYTL2Q9HCH5 934 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 BPIFA1Q9NP55 256 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 TAS2R13Q9NYV9 303 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 HACD3Q9P035 362 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 FAM50BQ9Y247 325 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 COPG1Q9Y678 874 aaKnown RBP21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 K7ERQ8 282 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 STX7O15400 261 aaKnown RBP21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 SUPT7LO94864 414 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 HERC3Q15034 1050 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 PELI3Q8N2H9 469 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 PTGR2Q8N8N7 351 aaPredicted RBP21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 CEP70Q8NHQ1 597 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 PAWRQ96IZ0 340 aaKnown RBP21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 BIRC8Q96P09 236 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 C11orf49Q9H6J7 331 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 ZBTB26Q9HCK0 441 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 PCDHB9Q9Y5E1 797 aa21.04■□□□□ 0.96
CCDC88B-208ENST00000492980 A0A0U1RQS6 177 aa21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 H7C0S8 307 aa21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 UBXN8O00124 270 aa21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 PDE5AO76074 875 aa21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 CKMP06732 381 aa21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 MTHFD2P13995 350 aa21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 EPHB1P54762 984 aa21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 C1QTNF8P60827 252 aa21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 SLC7A9P82251 487 aa21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 PTPRNQ16849 979 aa21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 DDI1Q8WTU0 396 aa21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 DERL2Q9GZP9 239 aa21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 CFAP97Q9P2B7 532 aa21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 VPS9D1Q9Y2B5 631 aa21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 OAS3Q9Y6K5 1087 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-208ENST00000492980 NRG2O14511 850 aaPredicted RBP21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 TTPAP49638 278 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 INHBCP55103 352 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 TBL3Q12788 808 aaKnown RBP21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 CYLC2Q14093 348 aaPredicted RBP21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 HTR3DQ70Z44 454 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 BBS7Q8IWZ6 715 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 NRG4Q8WWG1 115 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 IKZF3Q9UKT9 509 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 ZNF711Q9Y462 761 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 TRAF6Q9Y4K3 522 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 LRRC42Q9Y546 428 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 WASF2Q9Y6W5 498 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 LCHNA4D1U4 455 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 KIAA0355O15063 1070 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 SORBS2O94875 1100 aaKnown RBP21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 LRG1P02750 347 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 LINC00271P0C7V0 271 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 TSPAN8P19075 237 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 AP1S1P61966 158 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 ZRANB3Q5FWF4 1079 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 CHSY3Q70JA7 882 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 CPXM2Q8N436 756 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 ZNF784Q8NCA9 323 aaPredicted RBP21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 KIAA1191Q96A73 305 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 MYO19Q96H55 970 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 GPR21Q99679 349 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 C2orf49Q9BVC5 232 aaPredicted RBP21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 TM6SF2Q9BZW4 377 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 SH3BP1Q9Y3L3 701 aa21.02■□□□□ 0.96
CCDC88B-208ENST00000492980 CCDC189A1A4V9 331 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 AIM2O14862 343 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 SMAD6O43541 496 aaKnown RBP21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 OR1I1O60431 355 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 KERAO60938 352 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 BAIAP3O94812 1187 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 PRAMEF12O95522 483 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 RAG1P15918 1043 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 NUDT2P50583 147 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 RAD51Q06609 339 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 CTSL3PQ5NE16 218 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 LILRA6Q6PI73 481 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 OTOP2Q7RTS6 562 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 IL17CQ9P0M4 197 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 GALPQ9UBC7 116 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 STK39Q9UEW8 545 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms