RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ADAMTSL4Q6UY14 1074 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 RANBP10Q6VN20 620 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ERMP1Q7Z2K6 904 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 GLT6D1Q7Z4J2 308 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 RBFAQ8N0V3 343 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 EID2Q8N6I1 236 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CCDC89Q8N998 374 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ZNF548Q8NEK5 533 aaPredicted RBP16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 OR56A4Q8NGH8 313 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 BLOC1S5Q8TDH9 187 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 MS4A14Q96JA4 679 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TBATAQ96M53 351 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 WDR24Q96S15 920 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 NAP1L3Q99457 506 aaPredicted RBP16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CDC6Q99741 560 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 APOL2Q9BQE5 337 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 LGR4Q9BXB1 951 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SLC13A1Q9BZW2 595 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CDH19Q9H159 772 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 FAM83DQ9H4H8 585 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 RAD18Q9NS91 495 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 UCKL1Q9NWZ5 548 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TTC7AQ9ULT0 858 aaPredicted RBP16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 DRG1Q9Y295 367 aaKnown RBP16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TMEM202A6NGA9 273 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PGRMC1O00264 195 aaKnown RBP16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CES2O00748 559 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TNFRSF10CO14798 259 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 AURKAO14965 403 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PSMD3O43242 534 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 RASGRP1O95267 797 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 FDFT1P37268 417 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 HK3P52790 923 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 DCDC1P59894 354 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SRP54P61011 504 aaKnown RBP16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SPARCL1Q14515 664 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TRIP6Q15654 476 aaKnown RBP16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 KCTD11Q693B1 232 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 HID1Q8IV36 788 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SLC25A45Q8N413 288 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TTC30BQ8N4P2 665 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TAB3Q8N5C8 712 aaPredicted RBP16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PRELID2Q8N945 189 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 LMX1AQ8TE12 382 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 COG1Q8WTW3 980 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TSACCQ96A04 125 aaPredicted RBP16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PDXPQ96GD0 296 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 AGAP2Q99490 1192 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TCEAL2Q9H3H9 227 aaPredicted RBP16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 LRRC40Q9H9A6 602 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 FGF22Q9HCT0 170 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PAK5Q9P286 719 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 NFKBIL1Q9UBC1 381 aaPredicted RBP16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SPASTQ9UBP0 616 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 FTSJ1Q9UET6 329 aa16.21■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 COL5A1P20908 1838 aaPredicted RBP16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 LRP4O75096 1905 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 SPAARA0A1B0GVQ0 90 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 NEMP2A6NFY4 417 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 AQP9O43315 295 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 USP12O75317 370 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 AP2A1O95782 977 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 TNFP01375 233 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 ALPPL2P10696 532 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 ETS1P14921 441 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 TCP1P17987 556 aaKnown RBP16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 HMGCLP35914 325 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 HS1BP3Q53T59 392 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 PRRT3Q5FWE3 981 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 ALS2CLQ60I27 953 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 NYAP1Q6ZVC0 841 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 GSTA5Q7RTV2 222 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 RD3Q7Z3Z2 195 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 GLRX5Q86SX6 157 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 PRUNE1Q86TP1 453 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 GPR26Q8NDV2 337 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 ACTRT1Q8TDG2 376 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 OR1E3Q8WZA6 343 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 HIC2Q96JB3 615 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 LRRC61Q9BV99 259 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 FRMD8Q9BZ67 464 aaPredicted RBP16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 KCND1Q9NSA2 647 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 FEZ2Q9UHY8 353 aaPredicted RBP16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 CSNK1G3Q9Y6M4 447 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 DGKBQ9Y6T7 804 aa16.2■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 SCN8AQ9UQD0 1980 aa16.19■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 PRSS38A1L453 326 aa16.19■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 FADS2P1A8MWK0 482 aa16.19■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 SCAMP1O15126 338 aa16.19■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 INPP4BO15327 924 aa16.19■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 FFAR2O15552 330 aa16.19■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 LDOC1O95751 146 aaPredicted RBP16.19■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 CTSEP14091 401 aa16.19■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 BPIP17213 487 aa16.19■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 KCNJ1P48048 391 aa16.19■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 SIM1P81133 766 aaPredicted RBP16.19■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 KCTD16Q68DU8 428 aa16.19■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 DENND5AQ6IQ26 1287 aa16.19■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 PDCD7Q8N8D1 485 aaKnown RBP16.19■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 GLIS1Q8NBF1 620 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms