RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 DGKBQ9Y6T7 804 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 AKAP11Q9UKA4 1901 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 ALS2Q96Q42 1657 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 BRCA1P38398 1863 aaKnown RBP2.24□□□□□ -2.05
HMGB1-208ENST00000490788 PPIP5K1Q6PFW1 1433 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 KIF13BQ9NQT8 1826 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 CPDO75976 1380 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 ZNF541Q9H0D2 1346 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 SLIT3O75094 1523 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 TRPM3Q9HCF6 1732 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 CRYBG1Q9Y4K1 1723 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 CCDC88AQ3V6T2 1871 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 GOLGA6L10A0A0M3HER8 536 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 CCDC196A0A1B0GTZ2 297 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 PABPN1LA6NDY0 278 aaKnown RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 FAM90A7PA6NKC0 464 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 FAM90A22PA8MWA6 464 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 FAM90A12PA8MX19 464 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 FAM90A23PA8MXZ1 464 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 GTPBP1O00178 669 aaKnown RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 NPHP1O15259 732 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 EIF3JO75822 258 aaKnown RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 RGS11O94810 467 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 SOX30O94993 753 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 NDUFB4O95168 129 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 VNN2O95498 520 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 PLA2G2AP14555 144 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 CNTFP26441 200 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 FMO4P31512 558 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 PAFAH1B1P43034 410 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 MXI1P50539 228 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 NR1H2P55055 460 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 RIPK4P57078 832 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 TUBA1BP68363 451 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 RPP30P78346 268 aaKnown RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 RPL36AP83881 106 aaKnown RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 ADORA2A-AS1P86434 159 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 EFNB1P98172 346 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 POU3F1Q03052 451 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 CHRNDQ07001 517 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 DDR1Q08345 913 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 SLC20A2Q08357 652 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 TDGQ13569 410 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 CTTNQ14247 550 aaKnown RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 DHX8Q14562 1220 aaKnown RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 PPP2R5BQ15173 497 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 CALCRLQ16602 461 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 KIF19Q2TAC6 998 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 XKR9Q5GH70 373 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 SERTAD4-AS1Q5TG53 156 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 CASC1Q6TDU7 716 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 SHFQ7M4L6 423 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 DGLUCYQ7Z3D6 616 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 LRRTM4Q86VH4 590 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 NR2C2APQ86WQ0 139 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 NBPF5PQ86XG9 351 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 KIAA2013Q8IYS2 634 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 CLIP4Q8N3C7 705 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 ZCCHC9Q8N567 271 aaKnown RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 PARP16Q8N5Y8 322 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 OTUD6BQ8N6M0 293 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 C11orf65Q8NCR3 313 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 GJC3Q8NFK1 279 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 ZCCHC10Q8TBK6 192 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 GPT2Q8TD30 523 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 RUFY2Q8WXA3 655 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 WASF1Q92558 559 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 USP13Q92995 863 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 ERO1AQ96HE7 468 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 IGSF21Q96ID5 467 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 ADGRG7Q96K78 797 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 LRFN5Q96NI6 719 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 EPYCQ99645 322 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 KRTAP4-3Q9BYR4 195 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 GPR63Q9BZJ6 419 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 RETREG1Q9H6L5 497 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 SMYD2Q9NRG4 433 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 CYSLTR2Q9NS75 346 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 TERF2IPQ9NYB0 399 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 MALT1Q9UDY8 824 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 AGO1Q9UL18 857 aaKnown RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 ICAM5Q9UMF0 924 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 GPR52Q9Y2T5 361 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 FAM96BQ9Y3D0 163 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 RAI2Q9Y5P3 530 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 NFS1Q9Y697 457 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 WNK3Q9BYP7 1800 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 YTHDC2Q9H6S0 1430 aaKnown RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 RGPD8O14715 1765 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-208ENST00000490788 ADAMTSL1Q8N6G6 1762 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 CCDC7Q96M83 1385 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 PLEKHH1Q9ULM0 1364 aa2.23□□□□□ -2.05
HMGB1-208ENST00000490788 C4AP0C0L4 1744 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 TRPM7Q96QT4 1865 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 C5P01031 1676 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 LMO7Q8WWI1 1683 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 QRICH2Q9H0J4 1663 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 IGLV5-37A0A075B6J1 123 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 TEX13CA0A0J9YWL9 993 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms