RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FMO4P31512 558 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 ATP4BP51164 291 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 TRIP4Q15650 581 aaPredicted RBP17.91■□□□□ 0.46
VIM-206ENST00000487938 CLLU1OSQ5K130 101 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 VARS2Q5ST30 1063 aaKnown RBP17.91■□□□□ 0.46
VIM-206ENST00000487938 GLB1LQ6UWU2 654 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 RAB44Q7Z6P3 723 aaPredicted RBP17.91■□□□□ 0.46
VIM-206ENST00000487938 CHERPQ8IWX8 916 aaKnown RBP17.91■□□□□ 0.46
VIM-206ENST00000487938 PCYOX1LQ8NBM8 494 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 GRIN3AQ8TCU5 1115 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 TUBGCP3Q96CW5 907 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 ARHGAP39Q9C0H5 1083 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.91■□□□□ 0.46
VIM-206ENST00000487938 PLK2Q9NYY3 685 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 FGF4P08620 206 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 CAPN3P20807 821 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 ACVR1Q04771 509 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 APOFQ13790 326 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 NFE2Q16621 373 aaPredicted RBP17.91■□□□□ 0.46
VIM-206ENST00000487938 RGMBQ6NW40 437 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 HACD2Q6Y1H2 254 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 SPPL2CQ8IUH8 684 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 BRSK1Q8TDC3 778 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 ATOH8Q96SQ7 321 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 SEMA4BQ9NPR2 832 aaPredicted RBP17.91■□□□□ 0.46
VIM-206ENST00000487938 IKZF3Q9UKT9 509 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 SUPT3HB4E1H0 165 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 PLOD2O00469 737 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 CLGNO14967 610 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 CLASP2O75122 1294 aaKnown RBP17.9■□□□□ 0.46
VIM-206ENST00000487938 SUPT3HO75486 399 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 STAMBPO95630 424 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 HSPA8P11142 646 aaKnown RBP17.9■□□□□ 0.46
VIM-206ENST00000487938 EEF1DP29692 281 aaKnown RBP17.9■□□□□ 0.46
VIM-206ENST00000487938 PRKCQQ04759 706 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 PARP15Q460N3 678 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 NADSYN1Q6IA69 706 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 PAQR3Q6TCH7 311 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 MIER2Q8N344 545 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 OR2T34Q8NGX1 318 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 OR2T3Q8NH03 318 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 ROPN1LQ96C74 230 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 FEM1CQ96JP0 617 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 SMIM14Q96QK8 99 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 AARSD1Q9BTE6 412 aaKnown RBP17.9■□□□□ 0.46
VIM-206ENST00000487938 AURKCQ9UQB9 309 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 TIMM22Q9Y584 194 aa17.9■□□□□ 0.46
VIM-206ENST00000487938 NCF1BA6NI72 391 aaPredicted RBP17.89■□□□□ 0.46
VIM-206ENST00000487938 NCF1CA8MVU1 366 aaPredicted RBP17.89■□□□□ 0.46
VIM-206ENST00000487938 H3BSA7 217 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 SOCS2O14508 198 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 PRAMEF11O60813 436 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 ADAMTS4O75173 837 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 RHOBTB1O94844 696 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 FGF1P05230 155 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 HGFP14210 728 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 NCF1P14598 390 aaPredicted RBP17.89■□□□□ 0.46
VIM-206ENST00000487938 HLA-DPA1P20036 260 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 CRHR2Q13324 411 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 RPS6KA2Q15349 733 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 CTXN3Q4LDR2 81 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 MFSD14CQ5VZR4 134 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 ZBTB49Q6ZSB9 765 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 PHYKPLQ8IUZ5 450 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 COLGALT2Q8IYK4 626 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 GPR150Q8NGU9 434 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 RIN3Q8TB24 985 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 DIS3LQ8TF46 1054 aaKnown RBP17.89■□□□□ 0.46
VIM-206ENST00000487938 DUS3LQ96G46 650 aaKnown RBP17.89■□□□□ 0.46
VIM-206ENST00000487938 CDKN2AIPNLQ96HQ2 116 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 FUBP3Q96I24 572 aaKnown RBP eCLIP17.89■□□□□ 0.46
VIM-206ENST00000487938 ZNF512Q96ME7 567 aaPredicted RBP17.89■□□□□ 0.46
VIM-206ENST00000487938 GPATCH1Q9BRR8 931 aaKnown RBP17.89■□□□□ 0.46
VIM-206ENST00000487938 EFHD1Q9BUP0 239 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 RBM38Q9H0Z9 239 aaKnown RBP17.89■□□□□ 0.46
VIM-206ENST00000487938 UPF3AQ9H1J1 476 aaKnown RBP17.89■□□□□ 0.46
VIM-206ENST00000487938 OCEL1Q9H607 264 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 CCSER2Q9H7U1 834 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 CAAP1Q9H8G2 361 aa17.89■□□□□ 0.46
VIM-206ENST00000487938 ANGPT2O15123 496 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 UGT1A6P19224 532 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 APLP1P51693 650 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 KCNQ1P51787 676 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 TNK2Q07912 1038 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 MAP7Q14244 749 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 KANK2Q63ZY3 851 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 B3GNT6Q6ZMB0 384 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 SLC15A3Q8IY34 581 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 NSMCE3Q96MG7 304 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 OSBPL11Q9BXB4 747 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 DDX18Q9NVP1 670 aaKnown RBP17.89■□□□□ 0.45
VIM-206ENST00000487938 GALPQ9UBC7 116 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 POLG2Q9UHN1 485 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 RNF112Q9ULX5 631 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 SPO11Q9Y5K1 396 aa17.89■□□□□ 0.45
VIM-206ENST00000487938 FAM149AA5PLN7 773 aa17.88■□□□□ 0.45
VIM-206ENST00000487938 SAC3D1A6NKF1 404 aa17.88■□□□□ 0.45
VIM-206ENST00000487938 SOX11P35716 441 aa17.88■□□□□ 0.45
VIM-206ENST00000487938 CDKN1CP49918 316 aaPredicted RBP17.88■□□□□ 0.45
VIM-206ENST00000487938 STC1P52823 247 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms