RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 ITPR1Q14643 2758 aa23.34■■□□□ 1.33
C9orf3-215ENST00000478473 SOWAHDA6NJG2 315 aa23.33■■□□□ 1.33
C9orf3-215ENST00000478473 CLDN7O95471 211 aa23.33■■□□□ 1.33
C9orf3-215ENST00000478473 GLB1P16278 677 aa23.33■■□□□ 1.33
C9orf3-215ENST00000478473 GPR1P46091 355 aa23.33■■□□□ 1.33
C9orf3-215ENST00000478473 LSSP48449 732 aa23.33■■□□□ 1.33
C9orf3-215ENST00000478473 SPINT3P49223 89 aa23.33■■□□□ 1.33
C9orf3-215ENST00000478473 ADCY2Q08462 1091 aa23.33■■□□□ 1.33
C9orf3-215ENST00000478473 RBM44Q6ZP01 1051 aaKnown RBP23.33■■□□□ 1.33
C9orf3-215ENST00000478473 TAF8Q7Z7C8 310 aa23.33■■□□□ 1.33
C9orf3-215ENST00000478473 NRROSQ86YC3 692 aa23.33■■□□□ 1.33
C9orf3-215ENST00000478473 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP23.33■■□□□ 1.33
C9orf3-215ENST00000478473 FAM46DQ8NEK8 389 aa23.33■■□□□ 1.33
C9orf3-215ENST00000478473 SCAMP4Q969E2 229 aa23.33■■□□□ 1.33
C9orf3-215ENST00000478473 CARS2Q9HA77 564 aaKnown RBP23.33■■□□□ 1.33
C9orf3-215ENST00000478473 GLOD4Q9HC38 313 aa23.33■■□□□ 1.33
C9orf3-215ENST00000478473 NFKBIL1Q9UBC1 381 aaPredicted RBP23.33■■□□□ 1.33
C9orf3-215ENST00000478473 EFR3BQ9Y2G0 817 aa23.33■■□□□ 1.33
C9orf3-215ENST00000478473 SBDSQ9Y3A5 250 aaKnown RBP eCLIP23.33■■□□□ 1.33
C9orf3-215ENST00000478473 ZFYVE26Q68DK2 2539 aa23.33■■□□□ 1.33
C9orf3-215ENST00000478473 PJA2O43164 708 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 MTSS1O43312 755 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 PECAM1P16284 738 aaPredicted RBP23.32■■□□□ 1.32
C9orf3-215ENST00000478473 PTPN3P26045 913 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 MARCKSL1P49006 195 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 COPS2P61201 443 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 DYNLT1P63172 113 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 WASHC5Q12768 1159 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 HLTFQ14527 1009 aaKnown RBP eCLIP23.32■■□□□ 1.32
C9orf3-215ENST00000478473 CERCAMQ5T4B2 595 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 HENMT1Q5T8I9 393 aaKnown RBP23.32■■□□□ 1.32
C9orf3-215ENST00000478473 LSMEM2Q8N112 164 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 CCL4L1Q8NHW4 92 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 TFB1MQ8WVM0 346 aaKnown RBP23.32■■□□□ 1.32
C9orf3-215ENST00000478473 RBM41Q96IZ5 413 aaKnown RBP23.32■■□□□ 1.32
C9orf3-215ENST00000478473 AGAP3Q96P47 875 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 MAGEE1Q9HCI5 957 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 SAE1Q9UBE0 346 aaPredicted RBP23.32■■□□□ 1.32
C9orf3-215ENST00000478473 GULP1Q9UBP9 304 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 CD84Q9UIB8 345 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 RABGEF1Q9UJ41 708 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 SUFUQ9UMX1 484 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 PCDHA3Q9Y5H8 950 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 ENTPD2Q9Y5L3 495 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 AK5Q9Y6K8 562 aa23.32■■□□□ 1.32
C9orf3-215ENST00000478473 C1orf232A0A0U1RR37 186 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 TLX3O43711 291 aaPredicted RBP23.31■■□□□ 1.32
C9orf3-215ENST00000478473 NUDT21O43809 227 aaKnown RBP23.31■■□□□ 1.32
C9orf3-215ENST00000478473 BRINP1O60477 761 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 TNNT1P13805 278 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 CTNNA1P35221 906 aaKnown RBP23.31■■□□□ 1.32
C9orf3-215ENST00000478473 EIF2S3P41091 472 aaKnown RBP23.31■■□□□ 1.32
C9orf3-215ENST00000478473 PDX1P52945 283 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 C14orf28Q4W4Y0 310 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 RAD9BQ6WBX8 426 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 BBS12Q6ZW61 710 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 PTCD2Q8WV60 388 aaKnown RBP23.31■■□□□ 1.32
C9orf3-215ENST00000478473 KRT35Q92764 455 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 P3H4Q92791 437 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 CCDC74AQ96AQ1 378 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 EID2BQ96D98 161 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 HIC2Q96JB3 615 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 AGAP2Q99490 1192 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 VAT1Q99536 393 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 RIOK2Q9BVS4 552 aaKnown RBP23.31■■□□□ 1.32
C9orf3-215ENST00000478473 GSDMCQ9BYG8 508 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 CEP41Q9BYV8 373 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 CDH19Q9H159 772 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 POLR1BQ9H9Y6 1135 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 CNOT6Q9ULM6 557 aaKnown RBP23.31■■□□□ 1.32
C9orf3-215ENST00000478473 ST14Q9Y5Y6 855 aa23.31■■□□□ 1.32
C9orf3-215ENST00000478473 ARHGEF17Q96PE2 2063 aaPredicted RBP23.3■■□□□ 1.32
C9orf3-215ENST00000478473 USP12O75317 370 aa23.3■■□□□ 1.32
C9orf3-215ENST00000478473 PTPN7P35236 360 aa23.3■■□□□ 1.32
C9orf3-215ENST00000478473 DCDC1P59894 354 aa23.3■■□□□ 1.32
C9orf3-215ENST00000478473 CDK18Q07002 472 aa23.3■■□□□ 1.32
C9orf3-215ENST00000478473 ILF3Q12906 894 aaKnown RBP eCLIP23.3■■□□□ 1.32
C9orf3-215ENST00000478473 TBC1D25Q3MII6 688 aa23.3■■□□□ 1.32
C9orf3-215ENST00000478473 ZNF438Q7Z4V0 828 aa23.3■■□□□ 1.32
C9orf3-215ENST00000478473 DAAM2Q86T65 1068 aa23.3■■□□□ 1.32
C9orf3-215ENST00000478473 TMEM139Q8IV31 216 aa23.3■■□□□ 1.32
C9orf3-215ENST00000478473 KIAA1524Q8TCG1 905 aa23.3■■□□□ 1.32
C9orf3-215ENST00000478473 CCHCR1Q8TD31 782 aa23.3■■□□□ 1.32
C9orf3-215ENST00000478473 FGF11Q92914 225 aa23.3■■□□□ 1.32
C9orf3-215ENST00000478473 ZNF578Q96N58 590 aaPredicted RBP23.3■■□□□ 1.32
C9orf3-215ENST00000478473 SRPK1Q96SB4 655 aaKnown RBP23.3■■□□□ 1.32
C9orf3-215ENST00000478473 SIRPGQ9P1W8 387 aa23.3■■□□□ 1.32
C9orf3-215ENST00000478473 VPS18Q9P253 973 aa23.3■■□□□ 1.32
C9orf3-215ENST00000478473 PCDHGA8Q9Y5G5 932 aa23.3■■□□□ 1.32
C9orf3-215ENST00000478473 A0A1W2PNU3 283 aaPredicted RBP23.29■■□□□ 1.32
C9orf3-215ENST00000478473 A0A1W2PQM1 296 aa23.29■■□□□ 1.32
C9orf3-215ENST00000478473 HACD1B0YJ81 288 aa23.29■■□□□ 1.32
C9orf3-215ENST00000478473 IPO7O95373 1038 aaKnown RBP23.29■■□□□ 1.32
C9orf3-215ENST00000478473 EPOP01588 193 aa23.29■■□□□ 1.32
C9orf3-215ENST00000478473 CDC25BP30305 580 aa23.29■■□□□ 1.32
C9orf3-215ENST00000478473 CD68P34810 354 aaPredicted RBP23.29■■□□□ 1.32
C9orf3-215ENST00000478473 ACTN2P35609 894 aa23.29■■□□□ 1.32
C9orf3-215ENST00000478473 ADCY8P40145 1251 aa23.29■■□□□ 1.32
C9orf3-215ENST00000478473 POLD2P49005 469 aa23.29■■□□□ 1.32
C9orf3-215ENST00000478473 ERVPABLB-1P60509 514 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms