RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 RFC2P35250 354 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 MAGEA10P43363 369 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-212ENST00000477970 RGRP47804 291 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 KCNC1P48547 511 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 KANK2Q63ZY3 851 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 TMEM198Q66K66 360 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 NCEH1Q6PIU2 408 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 GLT6D1Q7Z4J2 308 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 PIM3Q86V86 326 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 PPP2R3CQ969Q6 453 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 NACA2Q9H009 215 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 SUDS3Q9H7L9 328 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-212ENST00000477970 TAS2R13Q9NYV9 303 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 MED16Q9Y2X0 877 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 STX16-NPEPL1H3BU86 382 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 STX16O14662 325 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 VPS4BO75351 444 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 BCAS2O75934 225 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-212ENST00000477970 OLFM2O95897 454 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 LPOP22079 712 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-212ENST00000477970 CLCN2P51788 898 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 RPS24P62847 133 aaKnown RBP12.18□□□□□ -0.46
PTPRF-212ENST00000477970 PEX6Q13608 980 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 SETMARQ53H47 684 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-212ENST00000477970 OGFRL1Q5TC84 451 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-212ENST00000477970 LDB1Q86U70 411 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-212ENST00000477970 RNF135Q8IUD6 432 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 NKAPQ8N5F7 415 aaKnown RBP12.18□□□□□ -0.46
PTPRF-212ENST00000477970 MDGA1Q8NFP4 955 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 HMGCLL1Q8TB92 370 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 STAG3L4Q8TBR4 150 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 SLC26A7Q8TE54 656 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 TTC1Q99614 292 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 CYP4F12Q9HCS2 524 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 TNFRSF12AQ9NP84 129 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 ACSS2Q9NR19 701 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 TMEM39AQ9NV64 488 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 DNMT3BQ9UBC3 853 aaKnown RBP12.18□□□□□ -0.46
PTPRF-212ENST00000477970 SUCOQ9UBS9 1254 aaKnown RBP12.18□□□□□ -0.46
PTPRF-212ENST00000477970 CRYL1Q9Y2S2 319 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 YIPF1Q9Y548 306 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 MAGEA13PA6NCF6 341 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 BBIP1A8MTZ0 92 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 CCL22O00626 93 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 PQBP1O60828 265 aaKnown RBP12.17□□□□□ -0.46
PTPRF-212ENST00000477970 CD160O95971 181 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 ME2P23368 584 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 ARF5P84085 180 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 PDAP1Q13442 181 aaKnown RBP12.17□□□□□ -0.46
PTPRF-212ENST00000477970 RAB33AQ14088 237 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 LRP8Q14114 963 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 TXNDC11Q6PKC3 985 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 IZUMO2Q6UXV1 221 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 CYHR1Q6ZMK1 362 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 MRPL1Q9BYD6 325 aaKnown RBP12.17□□□□□ -0.46
PTPRF-212ENST00000477970 KLHL4Q9C0H6 718 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 PTPRSQ13332 1948 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 SYCE1LA8MT33 242 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 TRIM38O00635 465 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 FZD6O60353 706 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 PMLP29590 882 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 TTPAP49638 278 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 ART3Q13508 389 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 OR4D1Q15615 310 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 AARS2Q5JTZ9 985 aaKnown RBP12.17□□□□□ -0.46
PTPRF-212ENST00000477970 TTC30BQ8N4P2 665 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 PYDC1Q8WXC3 89 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 USP13Q92995 863 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-212ENST00000477970 DUS3LQ96G46 650 aaKnown RBP12.17□□□□□ -0.46
PTPRF-212ENST00000477970 ZFRQ96KR1 1074 aaKnown RBP12.17□□□□□ -0.46
PTPRF-212ENST00000477970 BTBD9Q96Q07 612 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 SLC25A23Q9BV35 468 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 UNKQ9C0B0 810 aaKnown RBP12.17□□□□□ -0.46
PTPRF-212ENST00000477970 VCXQ9H320 206 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 TMEM45AQ9NWC5 275 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 SORBS2O94875 1100 aaKnown RBP12.17□□□□□ -0.46
PTPRF-212ENST00000477970 PYGLP06737 847 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 ALDH1A3P47895 512 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 SGSHP51688 502 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 RAD51Q06609 339 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 TRAP1Q12931 704 aaKnown RBP12.17□□□□□ -0.46
PTPRF-212ENST00000477970 TCHHL1Q5QJ38 904 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-212ENST00000477970 CNKSR3Q6P9H4 555 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 PHF21BQ96EK2 531 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 C19orf60Q96EN9 201 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 CDRT15Q96T59 188 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 SPATS2LQ9NUQ6 558 aaKnown RBP12.17□□□□□ -0.46
PTPRF-212ENST00000477970 LHX3Q9UBR4 397 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 ADAMTS6Q9UKP5 1117 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 OR51B4Q9Y5P0 310 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 RAI2Q9Y5P3 530 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 TET1Q8NFU7 2136 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 BPTFQ12830 3046 aa12.17□□□□□ -0.46
PTPRF-212ENST00000477970 SCN8AQ9UQD0 1980 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 ANKRD66B4E2M5 251 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 PSMD12O00232 456 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 ACOT8O14734 319 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 BAG2O95816 211 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 RPS17P08708 135 aaKnown RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 CD1EP15812 388 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms