RNA–Protein interactions for RNA: ENST00000475540.1

SMC5-203, Transcript of structural maintenance of chromosomes 5, humanhuman

TSL 3

Gene SMC5, Length 688 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-203ENST00000475540 MT3P25713 68 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 ELF1P32519 619 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 CSNK2A1P68400 391 aaPredicted RBP6.3□□□□□ -1.4
SMC5-203ENST00000475540 FOXM1Q08050 763 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 GRIK2Q13002 908 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 DCTN2Q13561 401 aaKnown RBP6.3□□□□□ -1.4
SMC5-203ENST00000475540 TRNP1Q6NT89 227 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 ZNF34Q8IZ26 560 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 CSNK2A3Q8NEV1 391 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 RFFLQ8WZ73 363 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 TTC14Q96N46 770 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 MTERF1Q99551 399 aaKnown RBP6.3□□□□□ -1.4
SMC5-203ENST00000475540 PIP5K1AQ99755 562 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 CMKLR1Q99788 373 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 LRRC4Q9HBW1 653 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 DLGAP2Q9P1A6 1054 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 PADI1Q9ULC6 663 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 AMDHD2Q9Y303 409 aa6.3□□□□□ -1.4
SMC5-203ENST00000475540 CCDC189A1A4V9 331 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 S1PR1P21453 382 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 KRT9P35527 623 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 GNL1P36915 607 aaPredicted RBP6.29□□□□□ -1.4
SMC5-203ENST00000475540 TMEM115Q12893 351 aaPredicted RBP6.29□□□□□ -1.4
SMC5-203ENST00000475540 DPCR1Q3MIW9 517 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 TMED8Q6PL24 325 aaPredicted RBP6.29□□□□□ -1.4
SMC5-203ENST00000475540 GDPD4Q6W3E5 623 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 ZNF771Q7L3S4 317 aaPredicted RBP6.29□□□□□ -1.4
SMC5-203ENST00000475540 CACNA2D4Q7Z3S7 1137 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 ODF3L1Q8IXM7 274 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 MUC20Q8N307 709 aaPredicted RBP6.29□□□□□ -1.4
SMC5-203ENST00000475540 SPATA3Q8NHX4 192 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 ABTB1Q969K4 478 aaPredicted RBP6.29□□□□□ -1.4
SMC5-203ENST00000475540 FAM149B1Q96BN6 582 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 ORAI1Q96D31 301 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 PPM1MQ96MI6 270 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 PCGF1Q9BSM1 259 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 C1QTNF5Q9BXJ0 243 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 SLC26A6Q9BXS9 759 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 TMEM30AQ9NV96 361 aa6.29□□□□□ -1.4
SMC5-203ENST00000475540 A0A1W2PRG0 241 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 NPIPB15A6NHN6 443 aaPredicted RBP6.28□□□□□ -1.4
SMC5-203ENST00000475540 VCYO14598 125 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 EGFP01133 1207 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 IL7RP16871 459 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 KCNA5P22460 613 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 USP8P40818 1118 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 OLR1P78380 273 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 RELQ04864 619 aaPredicted RBP6.28□□□□□ -1.4
SMC5-203ENST00000475540 ARL16Q0P5N6 197 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 FRG1Q14331 258 aaKnown RBP6.28□□□□□ -1.4
SMC5-203ENST00000475540 FOXL2NBQ6ZUU3 175 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 DIS3L2Q8IYB7 885 aaKnown RBP6.28□□□□□ -1.4
SMC5-203ENST00000475540 PCYOX1LQ8NBM8 494 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 ETNPPLQ8TBG4 499 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 SLC20A1Q8WUM9 679 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 INTS12Q96CB8 462 aaKnown RBP6.28□□□□□ -1.4
SMC5-203ENST00000475540 MAP7D2Q96T17 732 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 SPRY4Q9C004 299 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 ACSS1Q9NUB1 689 aaPredicted RBP6.28□□□□□ -1.4
SMC5-203ENST00000475540 IRAK4Q9NWZ3 460 aa6.28□□□□□ -1.4
SMC5-203ENST00000475540 HMGB1P1B2RPK0 211 aaPredicted RBP6.27□□□□□ -1.41
SMC5-203ENST00000475540 SPINT2O43291 252 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 TGFB1I1O43294 461 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 CDH1P12830 882 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 ICAM3P32942 547 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 FUT6P51993 359 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 TBX2Q13207 712 aaPredicted RBP6.27□□□□□ -1.41
SMC5-203ENST00000475540 ACCSLQ4AC99 568 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 JAKMIP3Q5VZ66 844 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 GFRALQ6UXV0 394 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 KMT5CQ86Y97 462 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.27□□□□□ -1.41
SMC5-203ENST00000475540 LMNTD1Q8N9Z9 388 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 OR2AK2Q8NG84 335 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 DUSP19Q8WTR2 217 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 NODALQ96S42 347 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 ACOX2Q99424 681 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 STRA6Q9BX79 667 aa6.27□□□□□ -1.41
SMC5-203ENST00000475540 FBRSL1Q9HCM7 1045 aaKnown RBP6.27□□□□□ -1.41
SMC5-203ENST00000475540 A0A1W2PS18 150 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 ASPDHA6ND91 283 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 LILRA5A6NI73 299 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 KRT86O43790 486 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 LMX1BO60663 402 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 PAGE4O60829 102 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 NKX2-2O95096 273 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 RTN3O95197 1032 aaPredicted RBP6.26□□□□□ -1.41
SMC5-203ENST00000475540 ATP1A1P05023 1023 aaKnown RBP6.26□□□□□ -1.41
SMC5-203ENST00000475540 CORO1AP31146 461 aaKnown RBP6.26□□□□□ -1.41
SMC5-203ENST00000475540 CCR9P51686 369 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 KRT81Q14533 505 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 CXorf66Q5JRM2 361 aaPredicted RBP6.26□□□□□ -1.41
SMC5-203ENST00000475540 DCST1Q5T197 706 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 FRG2Q64ET8 278 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 DPPA4Q7L190 304 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 TMEM219Q86XT9 240 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 C1orf87Q8N0U7 546 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 PCDH20Q8N6Y1 951 aaKnown RBP6.26□□□□□ -1.41
SMC5-203ENST00000475540 OR14L1PQ8NHC6 308 aa6.26□□□□□ -1.41
SMC5-203ENST00000475540 IGSF8Q969P0 613 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms