RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 CDRT15L2A8MXV6 281 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 B4DGG1 531 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 AKR1B15C9JRZ8 316 aaPredicted RBP14.05□□□□□ -0.16
UPF3A-204ENST00000475218 CLDN7O95471 211 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 RPLP0P05388 317 aaKnown RBP14.05□□□□□ -0.16
UPF3A-204ENST00000475218 COMTP21964 271 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 CES1P23141 567 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 CD86P42081 329 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 NOP2P46087 812 aaKnown RBP14.05□□□□□ -0.16
UPF3A-204ENST00000475218 MAZP56270 477 aaKnown RBP14.05□□□□□ -0.16
UPF3A-204ENST00000475218 ERVPABLB-1P60509 514 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 ADCY2Q08462 1091 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 SPIDRQ14159 915 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 MFSD7Q6UXD7 560 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 ADAMTSL4Q6UY14 1074 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 ZNF765Q7L2R6 523 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 NLRP8Q86W28 1048 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 PATE1Q8WXA2 126 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 RNF25Q96BH1 459 aaPredicted RBP14.05□□□□□ -0.16
UPF3A-204ENST00000475218 GRAMD1AQ96CP6 724 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 AP2M1Q96CW1 435 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 NAF1Q96HR8 494 aaKnown RBP14.05□□□□□ -0.16
UPF3A-204ENST00000475218 COX14Q96I36 57 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 TRIB3Q96RU7 358 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 FOXP3Q9BZS1 431 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 KCTD5Q9NXV2 234 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 MOSPD1Q9UJG1 213 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 SSUH2Q9Y2M2 353 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 TMEM98Q9Y2Y6 226 aa14.05□□□□□ -0.16
UPF3A-204ENST00000475218 PDE2AO00408 941 aaPredicted RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 KRT1P04264 644 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 IVLP07476 585 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 GLB1P16278 677 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 ZNF30P17039 623 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 ADCY8P40145 1251 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 GNPDA1P46926 289 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 B4GALNT1Q00973 533 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 ZNF438Q7Z4V0 828 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 SPRED1Q7Z699 444 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 CCNJLQ8IV13 435 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 CNGA4Q8IV77 575 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 LPCAT1Q8NF37 534 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 WDR48Q8TAF3 677 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 RIOK2Q9BVS4 552 aaKnown RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 LRRN3Q9H3W5 708 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 DPEP2Q9H4A9 486 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 SYNDIG1Q9H7V2 258 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 TRNAU1APQ9NX07 287 aaKnown RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 TAAR2Q9P1P5 351 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 INTUQ9ULD6 942 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 ATXN7L1Q9ULK2 861 aaPredicted RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 ZFC3H1O60293 1989 aaKnown RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 GOLGA6CA6NDK9 693 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 GOLGA6BA6NDN3 693 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 RRP8O43159 456 aaKnown RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 GOLGA6DP0CG33 693 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 CDKN2BP42772 138 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 GPR1P46091 355 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 PCBP4P57723 403 aaKnown RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 RPL26P61254 145 aaKnown RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 CTBSQ01459 385 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 ZFYVE27Q5T4F4 411 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 DOK6Q6PKX4 331 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 LSMEM2Q8N112 164 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 Q8N9G6 341 aaPredicted RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 ZNF248Q8NDW4 579 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 IMP4Q96G21 291 aaKnown RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 LIN37Q96GY3 246 aaPredicted RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 GFM1Q96RP9 751 aaKnown RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 GOLGA6AQ9NYA3 693 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 LRIT1Q9P2V4 623 aa14.04□□□□□ -0.16
UPF3A-204ENST00000475218 SAE1Q9UBE0 346 aaPredicted RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 RPL26L1Q9UNX3 145 aaKnown RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 OAS3Q9Y6K5 1087 aaKnown RBP14.04□□□□□ -0.16
UPF3A-204ENST00000475218 CCDC187A0A096LP49 1063 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 FADS2P1A8MWK0 482 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 ANKRD66B4E2M5 251 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 APOL1O14791 398 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 B4GAT1O43505 415 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 NUDT21O43809 227 aaKnown RBP14.03□□□□□ -0.16
UPF3A-204ENST00000475218 LCA5LO95447 670 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 TPM1P09493 284 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 KRT10P13645 584 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 PNLIPP16233 465 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 PECAM1P16284 738 aaPredicted RBP14.03□□□□□ -0.16
UPF3A-204ENST00000475218 NFKBIAP25963 317 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 MARCKSL1P49006 195 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 EPHB1P54762 984 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 HADHBP55084 474 aaKnown RBP14.03□□□□□ -0.16
UPF3A-204ENST00000475218 ZFP36L1Q07352 338 aaKnown RBP14.03□□□□□ -0.16
UPF3A-204ENST00000475218 LLGL1Q15334 1064 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 TSR1Q2NL82 804 aaKnown RBP14.03□□□□□ -0.16
UPF3A-204ENST00000475218 HENMT1Q5T8I9 393 aaKnown RBP14.03□□□□□ -0.16
UPF3A-204ENST00000475218 LRRC69Q6ZNQ3 347 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 CLEC14AQ86T13 490 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 RHOT1Q8IXI2 618 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 NAGSQ8N159 534 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 OR6C4Q8NGE1 309 aa14.03□□□□□ -0.16
UPF3A-204ENST00000475218 WDR36Q8NI36 951 aaKnown RBP14.03□□□□□ -0.16
UPF3A-204ENST00000475218 INPP4BO15327 924 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms