RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PPP1R3GB7ZBB8 358 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 K7ELQ4 463 aaPredicted RBP7.98□□□□□ -1.13
USP54-211ENST00000474929 KIR2DS3K7RE56 304 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 M0QYV0 167 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 PEX12O00623 359 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 RASSF9O75901 435 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 NEFLP07196 543 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 ELFN1P0C7U0 828 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 DNASE1P24855 282 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 AK4P27144 223 aaPredicted RBP7.98□□□□□ -1.13
USP54-211ENST00000474929 MMP12P39900 470 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 KIR3DL1P43629 444 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 MAPK9P45984 424 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 RGS7P49802 495 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 LIG3P49916 1009 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 SOX8P57073 446 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 DLG4P78352 724 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 ARF5P84085 180 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 TUBB3Q13509 450 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 EIF4EBP2Q13542 120 aaPredicted RBP7.98□□□□□ -1.13
USP54-211ENST00000474929 KIR2DS5Q14953 304 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 MYLK3Q32MK0 819 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 LRRC73Q5JTD7 316 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 IRAK1BP1Q5VVH5 260 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 PMF1Q6P1K2 205 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 BRAT1Q6PJG6 821 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 OR6K2Q8NGY2 324 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 OR8K5Q8NH50 307 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 UBA3Q8TBC4 463 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 TAS1R2Q8TE23 839 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 CLEC4CQ8WTT0 213 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 CASKIN2Q8WXE0 1202 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 NR4A3Q92570 626 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 MR1Q95460 341 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 EPSTI1Q96J88 318 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 ELMO2Q96JJ3 720 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 OR2M4Q96R27 311 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 NCAPGQ9BPX3 1015 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 C17orf62Q9BQA9 187 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 ZNF559Q9BR84 538 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 DHRS4Q9BTZ2 278 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 SPON2Q9BUD6 331 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 NLNQ9BYT8 704 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 MIS12Q9H081 205 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 CUEDC2Q9H467 287 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 ZNF552Q9H707 407 aaPredicted RBP7.98□□□□□ -1.13
USP54-211ENST00000474929 UCK1Q9HA47 277 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 TMEM8AQ9HCN3 771 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 CNOT8Q9UFF9 292 aaKnown RBP7.98□□□□□ -1.13
USP54-211ENST00000474929 KCNN3Q9UGI6 736 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 SUFUQ9UMX1 484 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 LIMCH1Q9UPQ0 1083 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 ATP8A1Q9Y2Q0 1164 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 MFHAS1Q9Y4C4 1052 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 HIVEP2P31629 2446 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 NCOA6Q14686 2063 aaPredicted RBP7.98□□□□□ -1.13
USP54-211ENST00000474929 A0A0D9SEW6 157 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 TSPAN11A1L157 253 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 OR5K4A6NMS3 321 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 RNF212BA8MTL3 300 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 C19orf84I3L1E1 186 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 WIPF1O43516 503 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 STX10O60499 249 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 ZMPSTE24O75844 475 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 F12P00748 615 aaPredicted RBP7.97□□□□□ -1.13
USP54-211ENST00000474929 PAEPP09466 180 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 KRT13P13646 458 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 GJB2P29033 226 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 GTF2H1P32780 548 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 ADCY8P40145 1251 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 HADHAP40939 763 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 YWHAZP63104 245 aaKnown RBP7.97□□□□□ -1.13
USP54-211ENST00000474929 PTK2Q05397 1052 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 ATP1A4Q13733 1029 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 CEBPEQ15744 281 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 UGP2Q16851 508 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 BRMS1LQ5PSV4 323 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 KRT39Q6A163 491 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 DUS1LQ6P1R4 473 aaKnown RBP7.97□□□□□ -1.13
USP54-211ENST00000474929 ENDOVQ8N8Q3 282 aaKnown RBP7.97□□□□□ -1.13
USP54-211ENST00000474929 PLA2G15Q8NCC3 412 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 EPS8L1Q8TE68 723 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 ZDHHC12Q96GR4 267 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 SECISBP2Q96T21 854 aaKnown RBP7.97□□□□□ -1.13
USP54-211ENST00000474929 RUFY1Q96T51 708 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 LGR4Q9BXB1 951 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 FRMD8Q9BZ67 464 aaPredicted RBP7.97□□□□□ -1.13
USP54-211ENST00000474929 THAP9Q9H5L6 903 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 RETREG1Q9H6L5 497 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 SUDS3Q9H7L9 328 aaPredicted RBP7.97□□□□□ -1.13
USP54-211ENST00000474929 SEMA3GQ9NS98 782 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 AJAP1Q9UKB5 411 aaPredicted RBP7.97□□□□□ -1.13
USP54-211ENST00000474929 PCDHGC4Q9Y5F7 938 aa7.97□□□□□ -1.13
USP54-211ENST00000474929 H3BQV1 296 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 RECQL5O94762 991 aaPredicted RBP7.96□□□□□ -1.14
USP54-211ENST00000474929 ZWINTO95229 277 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 GLI1P08151 1106 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 CD63P08962 238 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 NELFEP18615 380 aaKnown RBP7.96□□□□□ -1.14
USP54-211ENST00000474929 TBXAS1P24557 533 aaPredicted RBP7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms