RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 PANX1Q96RD7 426 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 GAD1Q99259 594 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 ADI1Q9BV57 179 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 ING3Q9NXR8 418 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 MBD2Q9UBB5 411 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 A8MX80 341 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 GRM3Q14832 879 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 RAP1GAP2Q684P5 730 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 TRIM40Q6P9F5 258 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 PACRGLQ8N7B6 248 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 ZFAND2BQ8WV99 257 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 TRMT13Q9NUP7 481 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 POLR3HQ9Y535 204 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 BCKDKO14874 412 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 B4GALT5O43286 388 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 ARL2P36404 184 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 DSG4Q86SJ6 1040 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 FAM35AQ86V20 835 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 ERI1Q8IV48 349 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 LRRC17Q8N6Y2 441 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 MFHAS1Q9Y4C4 1052 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 IGKV6D-41A0A0C4DH26 115 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 RPP40O75818 363 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 CXCR2P25025 360 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 NTSP30990 170 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 LIPEQ05469 1076 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 FSTL4Q6MZW2 842 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 FAM180AQ6UWF9 173 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 DCAKDQ8WVC6 231 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 SKA1Q96BD8 255 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 NARS2Q96I59 477 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 TOR4AQ9NXH8 423 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 FAM208AQ9UK61 1670 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 CYP7B1O75881 506 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 SCELO95171 688 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 SERPINA1P01009 418 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 CCNCP24863 283 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 PTSQ03393 145 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 CBX3Q13185 183 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 ANO7Q6IWH7 933 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 FAM92BQ6ZTR7 304 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 USP7Q93009 1102 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 YTHDF1Q9BYJ9 559 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 ALG2Q9H553 416 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 MAGP20916 626 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 C9orf57Q5W0N0 161 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 PMF1Q6P1K2 205 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 SIX5Q8N196 739 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 ENDOVQ8N8Q3 282 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 ANKRD49Q8WVL7 239 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 TEFMQ96QE5 360 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 C2CD4BA6NLJ0 364 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 PSMD11O00231 422 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 FARP2O94887 1054 aaPredicted RBP18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 SEMA5AQ13591 1074 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 DLG2Q15700 870 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 ZFP28Q8NHY6 868 aa18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 ARIH1Q9Y4X5 557 aaPredicted RBP18.97■□□□□ 0.63
CCDC88B-204ENST00000463837 SPIBQ01892 262 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 FCHO2Q0JRZ9 810 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 LDLRAP1Q5SW96 308 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 TOP1MTQ969P6 601 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 MOXD2PA6NHM9 499 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 LOC110117498-PIK3R3F6TDL0 507 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 IGFBP5P24593 272 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 IKBKEQ14164 716 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 TCEAL1Q15170 157 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 HTRA1Q92743 480 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 RMI1Q9H9A7 625 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 RPRD1BQ9NQG5 326 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 IGSF9Q9P2J2 1179 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 DGKBQ9Y6T7 804 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 AFDNP55196 1824 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 SLC7A1P30825 629 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 BICRALQ6AI39 1079 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 RBFAQ8N0V3 343 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 ARL10Q8N8L6 244 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 NXF3Q9H4D5 531 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 MOV10Q9HCE1 1003 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 SMPD4Q9NXE4 827 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 DNMT3LQ9UJW3 386 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 ENTPD4Q9Y227 616 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 RBMX2Q9Y388 322 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 TCAF1Q9Y4C2 921 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 CST3P01034 146 aaPredicted RBP18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 ELP6Q0PNE2 266 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 TYSND1Q2T9J0 566 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 PABPC1LQ4VXU2 614 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 BHLHB9Q6PI77 547 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 RELL1Q8IUW5 271 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 IZUMO1Q8IYV9 350 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 ZNF671Q8TAW3 534 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 NTPCRQ9BSD7 190 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 DKK3Q9UBP4 350 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 AJAP1Q9UKB5 411 aaPredicted RBP18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 CNTN6Q9UQ52 1028 aa18.96■□□□□ 0.63
CCDC88B-204ENST00000463837 CD48P09326 243 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 SLURP2P0DP57 97 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 ACLYP53396 1101 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 LCP2Q13094 533 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms