RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 PCDH18Q9HCL0 1135 aa15.34■□□□□ 0.05
SKA3-204ENST00000462482 KCNK4Q9NYG8 393 aa15.34■□□□□ 0.05
SKA3-204ENST00000462482 RCOR3Q9P2K3 495 aaPredicted RBP15.34■□□□□ 0.05
SKA3-204ENST00000462482 PCDHGA4Q9Y5G9 962 aa15.34■□□□□ 0.05
SKA3-204ENST00000462482 IGHV5-10-1A0A0J9YXX1 117 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 ASMTLO95671 621 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 PEX11BO96011 259 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 CD1CP29017 333 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 POLD2P49005 469 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 LIMK2P53671 638 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 LRP8Q14114 963 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 TIGD7Q6NT04 549 aaPredicted RBP15.33■□□□□ 0.04
SKA3-204ENST00000462482 ADAMTSL4Q6UY14 1074 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 ZNF765Q7L2R6 523 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 TMPRSS9Q7Z410 1059 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 TSPAN33Q86UF1 283 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 GALNT13Q8IUC8 556 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 CBARPQ8N350 705 aaPredicted RBP15.33■□□□□ 0.04
SKA3-204ENST00000462482 IL22RA1Q8N6P7 574 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 EXD3Q8N9H8 876 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 RCBTB1Q8NDN9 531 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 OR4D9Q8NGE8 314 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 SEMA3CQ99985 751 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 ASPSCR1Q9BZE9 553 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 CD84Q9UIB8 345 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 ANAPC7Q9UJX3 599 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 TTLL3Q9Y4R7 772 aa15.33■□□□□ 0.04
SKA3-204ENST00000462482 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.32■□□□□ 0.04
SKA3-204ENST00000462482 MYO1FO00160 1098 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 WISP1O95388 367 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 CCL4P13236 92 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 NOP2P46087 812 aaKnown RBP15.32■□□□□ 0.04
SKA3-204ENST00000462482 ZNF165P49910 485 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 GPLD1P80108 840 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 SRSF6Q13247 344 aaKnown RBP15.32■□□□□ 0.04
SKA3-204ENST00000462482 LINC00303Q3SY05 128 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 LRRC66Q68CR7 880 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 MARK2Q7KZI7 788 aaKnown RBP15.32■□□□□ 0.04
SKA3-204ENST00000462482 TECPR1Q7Z6L1 1165 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 DTX1Q86Y01 620 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 NAGSQ8N159 534 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 NIPA2Q8N8Q9 360 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 OR10G6Q8NH81 332 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 EXD1Q8NHP7 514 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 PIH1D2Q8WWB5 315 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 SLC38A3Q99624 504 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 ABCG8Q9H221 673 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 TMEM98Q9Y2Y6 226 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 PPIL1Q9Y3C6 166 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 PCDHGA3Q9Y5H0 932 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 CFAP46Q8IYW2 2715 aa15.32■□□□□ 0.04
SKA3-204ENST00000462482 IGHV1OR21-1A0A087WYE8 117 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 A0A1B0GTH6 734 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 DUX1O43812 170 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 PPFIA2O75334 1257 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 FUCA1P04066 466 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 TCF4P15884 667 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 MAN1A1P33908 653 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 NFKBIBQ15653 356 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 TBR1Q16650 682 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 FIGNQ5HY92 759 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 NKAIN2Q5VXU1 208 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 E4F1Q66K89 784 aaPredicted RBP15.31■□□□□ 0.04
SKA3-204ENST00000462482 ATG14Q6ZNE5 492 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 NLRP8Q86W28 1048 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 FAM129CQ86XR2 697 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 MAP7D3Q8IWC1 876 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 NRSN1Q8IZ57 195 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.31■□□□□ 0.04
SKA3-204ENST00000462482 TEX26Q8N6G2 289 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 PATE1Q8WXA2 126 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 JPH3Q8WXH2 748 aaPredicted RBP15.31■□□□□ 0.04
SKA3-204ENST00000462482 NUP85Q9BW27 656 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 SLC39A1Q9NY26 324 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 AMACRQ9UHK6 382 aa15.31■□□□□ 0.04
SKA3-204ENST00000462482 FLNBO75369 2602 aaKnown RBP15.3■□□□□ 0.04
SKA3-204ENST00000462482 A0A0J9YYE9 177 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 PPM1DO15297 605 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 TRBC1P01850 177 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 PDHA1P08559 390 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 FAM87AP0C7U9 286 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 FGF3P11487 239 aaPredicted RBP15.3■□□□□ 0.04
SKA3-204ENST00000462482 SLC2A4P14672 509 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 GJC1P36383 396 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 RAB15P59190 212 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 SQSTM1Q13501 440 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 IFI16Q16666 785 aaKnown RBP15.3■□□□□ 0.04
SKA3-204ENST00000462482 PYCR3Q53H96 274 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 ZFYVE27Q5T4F4 411 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 DCAF12Q5T6F0 453 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 TMEM71Q6P5X7 295 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 ZNF574Q6ZN55 896 aaPredicted RBP15.3■□□□□ 0.04
SKA3-204ENST00000462482 RAVER1Q8IY67 606 aaKnown RBP15.3■□□□□ 0.04
SKA3-204ENST00000462482 KCTD6Q8NC69 237 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 ART4Q93070 314 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 SCAMP4Q969E2 229 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 SH3KBP1Q96B97 665 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 SCARF2Q96GP6 870 aaPredicted RBP15.3■□□□□ 0.04
SKA3-204ENST00000462482 NAP1L5Q96NT1 182 aaPredicted RBP15.3■□□□□ 0.04
SKA3-204ENST00000462482 RIOK2Q9BVS4 552 aaKnown RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms