RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 CFAP99D6REC4 459 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 F8W810 466 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 CLOCKO15516 846 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 SEC22BO75396 215 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 CHRNA1P02708 482 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 TTPAP49638 278 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 HK2P52789 917 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 PPIGQ13427 754 aaKnown RBP eCLIP11.62□□□□□ -0.559e-7■□□□□ 10.9
NPHP4-204ENST00000460696 ACAP2Q15057 778 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 TSNQ15631 228 aaKnown RBP11.62□□□□□ -0.55
NPHP4-204ENST00000460696 MTX3Q5HYI7 312 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 STEAP4Q687X5 459 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 FAM151BQ6UXP7 276 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 ARPINQ7Z6K5 226 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 MAB21L3Q8N8X9 362 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 PXYLP1Q8TE99 480 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 RMND5BQ96G75 393 aaPredicted RBP11.62□□□□□ -0.55
NPHP4-204ENST00000460696 TRMOQ9BU70 441 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 KIFC1Q9BW19 673 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 MRPL9Q9BYD2 267 aaKnown RBP11.62□□□□□ -0.55
NPHP4-204ENST00000460696 GKN1Q9NS71 199 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 KIF17Q9P2E2 1029 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 ZFP37Q9Y6Q3 630 aaPredicted RBP11.62□□□□□ -0.55
NPHP4-204ENST00000460696 KIAA1217Q5T5P2 1943 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 C1orf232A0A0U1RR37 186 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 NPEPPSL1A6NEC2 478 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 MATN2O00339 956 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 ZNF197O14709 1029 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 SLC7A4O43246 635 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 MT-ND1P03886 318 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 CORO1AP31146 461 aaKnown RBP11.62□□□□□ -0.55
NPHP4-204ENST00000460696 HSPA14Q0VDF9 509 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 C6orf52Q5T4I8 152 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 ELMSAN1Q6PJG2 1045 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 NAPRTQ6XQN6 538 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 PAQR9Q6ZVX9 377 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 OR9I1Q8NGQ6 314 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 MPP4Q96JB8 637 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 SLC39A3Q9BRY0 314 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 SMOC2Q9H3U7 446 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 ELOVL6Q9H5J4 265 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 PARVBQ9HBI1 364 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 PCDHGB4Q9UN71 923 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 TLR6Q9Y2C9 796 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 RAI2Q9Y5P3 530 aa11.62□□□□□ -0.55
NPHP4-204ENST00000460696 COPG1Q9Y678 874 aaKnown RBP11.62□□□□□ -0.55
NPHP4-204ENST00000460696 ZCWPW2A0A1B0GU75 182 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 A8MT66 165 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 GRXCR1A8MXD5 290 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 HAPLN1P10915 354 aaPredicted RBP11.61□□□□□ -0.55
NPHP4-204ENST00000460696 PAX3P23760 479 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 NDST2P52849 883 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 PGS1Q32NB8 556 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 STK32CQ86UX6 486 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 ENDOVQ8N8Q3 282 aaKnown RBP11.61□□□□□ -0.55
NPHP4-204ENST00000460696 TWIST2Q8WVJ9 160 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 FAM149AA5PLN7 773 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 EVPLLA8MZ36 301 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 ADCY6O43306 1168 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 LDLRP01130 860 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 FAM163BP0C2L3 166 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 PCNAP12004 261 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 PKMP14618 531 aaKnown RBP11.61□□□□□ -0.55
NPHP4-204ENST00000460696 HALP42357 657 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 TRIP4Q15650 581 aaPredicted RBP11.61□□□□□ -0.55
NPHP4-204ENST00000460696 SIRPB2Q5JXA9 342 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 ZNF555Q8NEP9 628 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 MAGEE2Q8TD90 523 aaPredicted RBP11.61□□□□□ -0.55
NPHP4-204ENST00000460696 TRAPPC9Q96Q05 1148 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 MKS1Q9NXB0 559 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 DNAJB4Q9UDY4 337 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 ASXL3Q9C0F0 2248 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 LOXHD1Q8IVV2 1947 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 MCM3APO60318 1980 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 KANSL1LA0AUZ9 987 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 ACSL4O60488 711 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 SNNO75324 88 aaPredicted RBP11.61□□□□□ -0.55
NPHP4-204ENST00000460696 GABBR2O75899 941 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 ALDH1A2O94788 518 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 HTR7P34969 479 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 IL10RBQ08334 325 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 LPIN1Q14693 890 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 GPRIN3Q6ZVF9 776 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 CYP4V2Q6ZWL3 525 aaPredicted RBP11.61□□□□□ -0.55
NPHP4-204ENST00000460696 CYS1Q717R9 158 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 CEP97Q8IW35 865 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 TXNDC5Q8NBS9 432 aaKnown RBP11.61□□□□□ -0.55
NPHP4-204ENST00000460696 MAPK15Q8TD08 544 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 GANCQ8TET4 914 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 MZB1Q8WU39 189 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 AUTS2Q8WXX7 1259 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 DCUN1D5Q9BTE7 237 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 CIPCQ9C0C6 399 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 LIMD1Q9UGP4 676 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 LZTS1Q9Y250 596 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 Q9Y3F1 56 aa11.61□□□□□ -0.55
NPHP4-204ENST00000460696 SLC35E2BP0CK96 405 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 MAGEA6P43360 314 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 PPP3CCP48454 512 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 CCNHP51946 323 aaPredicted RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms