RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 GHRP10912 638 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 KRT5P13647 590 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 NPR1P16066 1061 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 PCSK1P29120 753 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 CAMLGP49069 296 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ARFIP2P53365 341 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC5A3P53794 718 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC16A1P53985 500 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 PRRX1P54821 245 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 NPEPPSP55786 919 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 STX17P56962 302 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 MRPS9P82933 396 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 LRMPQ12912 555 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 PEX6Q13608 980 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 CAPRIN1Q14444 709 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 PHKG1Q16816 387 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 GTDC1Q4AE62 458 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 PAN2Q504Q3 1202 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 LACTB2Q53H82 288 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 CMPK2Q5EBM0 449 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 OR52E8Q6IFG1 317 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 SPOPLQ6IQ16 392 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 UTS2BQ765I0 119 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ADAMTSL2Q86TH1 951 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 RFX6Q8HWS3 928 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 MMAAQ8IVH4 418 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ZZZ3Q8IYH5 903 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ELMOD2Q8IZ81 293 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ICA1LQ8NDH6 482 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 TMEM52Q8NDY8 209 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 OR2I1PQ8NGU4 316 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 LHFPL5Q8TAF8 219 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 FAM71BQ8TC56 605 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 CCDC12Q8WUD4 166 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ZDHHC12Q96GR4 267 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 APIPQ96GX9 242 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 MYRFLQ96LU7 910 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 TOX2Q96NM4 488 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 CRAMP1Q96RY5 1269 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 SEC22CQ9BRL7 303 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 PLA2G12BQ9BX93 195 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ACE2Q9BYF1 805 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 GLIS2Q9BZE0 524 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 SYTL2Q9HCH5 934 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 KCNH7Q9NS40 1196 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 KRT84Q9NSB2 600 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ZDHHC18Q9NUE0 388 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 RIC8BQ9NVN3 520 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 LRFN1Q9P244 771 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 LIMA1Q9UHB6 759 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 BAIAP2L1Q9UHR4 511 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 PADI4Q9UM07 663 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 PCDHA12Q9UN75 941 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 IFT52Q9Y366 437 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 SAMHD1Q9Y3Z3 626 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 PCDHB1Q9Y5F3 818 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ATP23Q9Y6H3 246 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 DDX60Q8IY21 1712 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 TMEM82A0PJX8 343 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 TRPC5OSA6NMA1 111 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 DNALI1O14645 258 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ZNF197O14709 1029 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 CLOCKO15516 846 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 PHF2O75151 1096 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 PRDM1O75626 825 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 BCAR3O75815 825 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 UFL1O94874 794 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ERVK-10P10266 1014 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 COX5BP10606 129 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 GLB1P16278 677 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 PRKCAP17252 672 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 KCNA5P22460 613 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 TCEA1P23193 301 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 SP100P23497 879 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 RRM2P31350 389 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 CDH5P33151 784 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 TECP42680 631 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 PCYT1AP49585 367 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 HARS2P49590 506 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 RAP1GDS1P52306 607 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 HNRNPKP61978 463 aaKnown RBP eCLIP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ARF5P84085 180 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ELP6Q0PNE2 266 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 SNTA1Q13424 505 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 SNX17Q15036 470 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 MCMDC2Q4G0Z9 681 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 C10orf120Q5SQS8 335 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 RARS2Q5T160 578 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 AFMIDQ63HM1 303 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ANKRD34AQ69YU3 496 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ANKRD40Q6AI12 368 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 MTFR2Q6P444 385 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 SUSD1Q6UWL2 747 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 Q6ZNX1 250 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 HTR3DQ70Z44 454 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC24A5Q71RS6 500 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 THAP5Q7Z6K1 395 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ZGPATQ8N5A5 531 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ALLCQ8N6M5 410 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 OR52M1Q8NGK5 317 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms