RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 IFT81Q8WYA0 676 aa11.55□□□□□ -0.56
SCN9A-204ENST00000452182 HSPA12BQ96MM6 686 aa11.55□□□□□ -0.56
SCN9A-204ENST00000452182 KLF6Q99612 283 aaPredicted RBP11.55□□□□□ -0.56
SCN9A-204ENST00000452182 EBNA1BP2Q99848 306 aaKnown RBP11.55□□□□□ -0.56
SCN9A-204ENST00000452182 FAM83DQ9H4H8 585 aa11.55□□□□□ -0.56
SCN9A-204ENST00000452182 EBF2Q9HAK2 575 aa11.55□□□□□ -0.56
SCN9A-204ENST00000452182 CHRAC1Q9NRG0 131 aa11.55□□□□□ -0.56
SCN9A-204ENST00000452182 TREX1Q9NSU2 369 aa11.55□□□□□ -0.56
SCN9A-204ENST00000452182 SAMD15Q9P1V8 674 aa11.55□□□□□ -0.56
SCN9A-204ENST00000452182 MTRF1LQ9UGC7 380 aaKnown RBP11.55□□□□□ -0.56
SCN9A-204ENST00000452182 TEX264Q9Y6I9 313 aa11.55□□□□□ -0.56
SCN9A-204ENST00000452182 ABCA7Q8IZY2 2146 aa11.55□□□□□ -0.56
SCN9A-204ENST00000452182 PRAMEF26H0Y7S4 382 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 TTC4O95801 387 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 SLC4A1P02730 911 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 PYGLP06737 847 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 TEAD1P28347 426 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 MAT2AP31153 395 aaKnown RBP11.54□□□□□ -0.56
SCN9A-204ENST00000452182 SPAM1P38567 509 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 CRADDP78560 199 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 SEPT6Q14141 434 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 SIM2Q14190 667 aaPredicted RBP11.54□□□□□ -0.56
SCN9A-204ENST00000452182 HLTFQ14527 1009 aaKnown RBP eCLIP11.54□□□□□ -0.563e-12■■□□□ 11.6
SCN9A-204ENST00000452182 LRRC14Q15048 493 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 WSCD2Q2TBF2 565 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 BBS9Q3SYG4 887 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 CCDC38Q502W7 563 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 HENMT1Q5T8I9 393 aaKnown RBP11.54□□□□□ -0.56
SCN9A-204ENST00000452182 PDPK2PQ6A1A2 396 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 ESRP1Q6NXG1 681 aaKnown RBP11.54□□□□□ -0.56
SCN9A-204ENST00000452182 CEP68Q76N32 757 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 RELL1Q8IUW5 271 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 TMEM145Q8NBT3 493 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 GPR26Q8NDV2 337 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 OR4K2Q8NGD2 314 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 OR13C4Q8NGS5 318 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 OR13J1Q8NGT2 312 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 FAM174AQ8TBP5 190 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 AP2M1Q96CW1 435 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 NUS1Q96E22 293 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 STAMBPL1Q96FJ0 436 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 CDKN2AIPNLQ96HQ2 116 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 SGSM3Q96HU1 749 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 PWWP2AQ96N64 755 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 FMO2Q99518 471 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 ABCG8Q9H221 673 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 EPC1Q9H2F5 836 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 APPL1Q9UKG1 709 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 COQ6Q9Y2Z9 468 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 KCTD3Q9Y597 815 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 HS3ST3A1Q9Y663 406 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 SPAG17Q6Q759 2223 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 USP34Q70CQ2 3546 aa11.54□□□□□ -0.56
SCN9A-204ENST00000452182 MEI4A8MW99 385 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 TOR1BO14657 336 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 BUD23O43709 281 aaKnown RBP11.53□□□□□ -0.56
SCN9A-204ENST00000452182 USP1O94782 785 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 POLBP06746 335 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 TUBBP07437 444 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 TSHRP16473 764 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 PGAM1P18669 254 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 AKT2P31751 481 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 DPP6P42658 865 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 PTGER3P43115 390 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 PDIA2Q13087 525 aaKnown RBP11.53□□□□□ -0.56
SCN9A-204ENST00000452182 ERCC6LQ2NKX8 1250 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 LYSMD4Q5XG99 296 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 WDR93Q6P2C0 686 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 CASC4Q6P4E1 433 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 RFLNAQ6ZTI6 216 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 GPR161Q8N6U8 529 aaKnown RBP11.53□□□□□ -0.56
SCN9A-204ENST00000452182 C1orf216Q8TAB5 229 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 LOXL4Q96JB6 756 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 DNAJC1Q96KC8 554 aaKnown RBP11.53□□□□□ -0.56
SCN9A-204ENST00000452182 ZNF778Q96MU6 729 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 ZSCAN5AQ9BUG6 496 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 BPIFA1Q9NP55 256 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 IL26Q9NPH9 171 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 MAD1L1Q9Y6D9 718 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 GLYATL1P3A0A0U1RQE8 302 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 AGAP14A8MT82 685 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 RAD51BO15315 384 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 SLC31A1O15431 190 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 MCM3P25205 808 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 NMBRP28336 390 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 HOXD12P35452 270 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 TRIM23P36406 574 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 ELK3P41970 407 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 RACK1P63244 317 aaKnown RBP11.53□□□□□ -0.56
SCN9A-204ENST00000452182 XIAPP98170 497 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 PTPRCAPQ14761 206 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 IRF4Q15306 451 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 ANKRD20A4Q4UJ75 823 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 PEAR1Q5VY43 1037 aaPredicted RBP11.53□□□□□ -0.56
SCN9A-204ENST00000452182 KIAA0930Q6ICG6 404 aaPredicted RBP11.53□□□□□ -0.56
SCN9A-204ENST00000452182 ABI3BPQ7Z7G0 1075 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 IGDCC3Q8IVU1 814 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 ZBED8Q8IZ13 594 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 TRAM1L1Q8N609 369 aa11.53□□□□□ -0.56
SCN9A-204ENST00000452182 DEFB119Q8N690 84 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms