RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 ADAMTSL4Q6UY14 1074 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 ZNF765Q7L2R6 523 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 PID1Q7Z2X4 250 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 GKN2Q86XP6 184 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 SLC35F3Q8IY50 421 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 RAVER1Q8IY67 606 aaKnown RBP12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 SYCE1Q8N0S2 351 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 CCL4L1Q8NHW4 92 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 ACTL9Q8TC94 416 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 IFI44Q8TCB0 444 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 SCG3Q8WXD2 468 aaKnown RBP12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 EID2BQ96D98 161 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 QKIQ96PU8 341 aaKnown RBP eCLIP12.7□□□□□ -0.383e-9■□□□□ 11.2
PRPF40A-203ENST00000448428 WDR24Q96S15 920 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 VAT1Q99536 393 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 FRMD8Q9BZ67 464 aaPredicted RBP12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 TMEM168Q9H0V1 697 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 MAGEE1Q9HCI5 957 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 EVA1BQ9NVM1 165 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 NCKIPSDQ9NZQ3 722 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 PACSIN2Q9UNF0 486 aaPredicted RBP12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 DOLKQ9UPQ8 538 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 ADGRG1Q9Y653 693 aa12.7□□□□□ -0.38
PRPF40A-203ENST00000448428 ACACBO00763 2458 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 AKAP13Q12802 2813 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 PRSS38A1L453 326 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 EME2A4GXA9 379 aaPredicted RBP12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 H7C0C1 242 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 NDST3O95803 873 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 FTCDO95954 541 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 GP1BAP07359 652 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 PIRTP0C851 137 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 RBL1P28749 1068 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 CETN2P41208 172 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 ATP5OP48047 213 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 OTUD4Q01804 1114 aaKnown RBP12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 KDELC1Q6UW63 502 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 EFL1Q7Z2Z2 1120 aaKnown RBP12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 LYSMD3Q7Z3D4 306 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 TAF8Q7Z7C8 310 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 CACTIN-AS1Q8N1I8 211 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 CCHCR1Q8TD31 782 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 PTCD2Q8WV60 388 aaKnown RBP12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 GLMNQ92990 594 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 FCRL5Q96RD9 977 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 FAM118BQ9BPY3 351 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 ZFYVE1Q9HBF4 777 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 SIRPGQ9P1W8 387 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 KLHL8Q9P2G9 620 aaPredicted RBP12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 GULP1Q9UBP9 304 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 ZMIZ1Q9ULJ6 1067 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 PADI4Q9UM07 663 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 GPR34Q9UPC5 381 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 SHOC2Q9UQ13 582 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 TMEM98Q9Y2Y6 226 aa12.69□□□□□ -0.38
PRPF40A-203ENST00000448428 MAP1BP46821 2468 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 LOC285095A0A1B0GVY8 99 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 MIF4GDA9UHW6 222 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 F5H423 210 aaPredicted RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 TAF4O00268 1085 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 DDX3YO15523 660 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 TJP3O95049 919 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 MT-CO3P00414 261 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 RPIAP49247 311 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 WNT3AP56704 352 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 EIF3EP60228 445 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 PERM1Q5SV97 790 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 CDCP2Q5VXM1 449 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 CCDC70Q6NSX1 233 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 OGFOD3Q6PK18 319 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 TMC3Q7Z5M5 1100 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 TRIM74Q86UV6 250 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 RNF10Q8N5U6 811 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 UBL4BQ8N7F7 174 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 PDCD7Q8N8D1 485 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 DCBLD1Q8N8Z6 715 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 KYQ8NBH2 561 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 FAM46DQ8NEK8 389 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 MDM1Q8TC05 714 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 ZCCHC14Q8WYQ9 949 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 SCARF2Q96GP6 870 aaPredicted RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 OXNAD1Q96HP4 312 aaPredicted RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 COX14Q96I36 57 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 HIC2Q96JB3 615 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 ABCG4Q9H172 646 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 FAM83DQ9H4H8 585 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 SUDS3Q9H7L9 328 aaPredicted RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 CARS2Q9HA77 564 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 PKD2L2Q9NZM6 624 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 FAM153AQ9UHL3 310 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 TRHDEQ9UKU6 1024 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 CNOT6Q9ULM6 557 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 SUFUQ9UMX1 484 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 CLCA2Q9UQC9 943 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 SLC17A4Q9Y2C5 497 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 CAPN6Q9Y6Q1 641 aa12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 ZFC3H1O60293 1989 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 COL27A1Q8IZC6 1860 aaPredicted RBP12.68□□□□□ -0.38
PRPF40A-203ENST00000448428 SCN8AQ9UQD0 1980 aa12.67□□□□□ -0.38
PRPF40A-203ENST00000448428 CHD8Q9HCK8 2581 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms