RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 PIGKQ92643 395 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 DPF2Q92785 391 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 OR52E6Q96RD3 313 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 MGME1Q9BQP7 344 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 SEZ6LQ9BYH1 1024 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 TM6SF2Q9BZW4 377 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 SDHAF3Q9NRP4 125 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 POLLQ9UGP5 575 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 IFT52Q9Y366 437 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 KIF1AQ12756 1690 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 TPP1O14773 563 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 AKAP8O43823 692 aaKnown RBP6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PLOD3O60568 738 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 CLEC3AO75596 197 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 GLUD2P49448 558 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 CCL23P55773 120 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 RAB10P61026 200 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 SNTA1Q13424 505 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 MSANTD2Q6P1R3 559 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 KCTD8Q6ZWB6 473 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PACS2Q86VP3 889 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 UNC5BQ8IZJ1 945 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 DNAJA4Q8WW22 397 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-204ENST00000423058 OXNAD1Q96HP4 312 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-204ENST00000423058 LMLNQ96KR4 655 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ULBP1Q9BZM6 244 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PORCNQ9H237 461 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 IL1RAPQ9NPH3 570 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 C1orf167Q5SNV9 1468 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 METTL21EPA6NDL7 271 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 MEIS2O14770 477 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 AREL1O15033 823 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 NAA30Q147X3 362 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-204ENST00000423058 AAK1Q2M2I8 961 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 RGMBQ6NW40 437 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 GPR180Q86V85 440 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 TRPV1Q8NER1 839 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 FBXO30Q8TB52 745 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 HDAC7Q8WUI4 952 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 KCNK4Q9NYG8 393 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 GRIP1Q9Y3R0 1128 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 NWD1Q149M9 1564 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PIK3C2BO00750 1634 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 FAM172BPA6NC97 362 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PPP1R3GB7ZBB8 358 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PEX14O75381 377 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ZCCHC18P0CG32 403 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 GRK6P43250 576 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 CDH4P55283 916 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 FOXM1Q08050 763 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 DUPD1Q68J44 220 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PGBD2Q6P3X8 592 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ABHD13Q7L211 337 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ANKRD23Q86SG2 305 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 TMPRSS11BQ86T26 416 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 OR4C6Q8NH72 309 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 SLC47A1Q96FL8 570 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 MYO19Q96H55 970 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 UNKQ9C0B0 810 aaKnown RBP6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PCDH18Q9HCL0 1135 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 CCNB1IP1Q9NPC3 277 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 SAR1AQ9NR31 198 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 IKZF2Q9UKS7 526 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 DERAQ9Y315 318 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 SAMHD1Q9Y3Z3 626 aaKnown RBP6.85□□□□□ -1.31
SCN1A-204ENST00000423058 HYKKA2RU49 373 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF726A6NNF4 738 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 CSDE1O75534 798 aaKnown RBP6.84□□□□□ -1.31
SCN1A-204ENST00000423058 RLN1P04808 185 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 RGS8P57771 180 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-204ENST00000423058 GRB10Q13322 594 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 UBXN2BQ14CS0 331 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.84□□□□□ -1.313e-6■■■□□ 18.5
SCN1A-204ENST00000423058 FIGNQ5HY92 759 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 THAP5Q7Z6K1 395 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 MON1AQ86VX9 555 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 LRRC34Q8IZ02 419 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF540Q8NDQ6 660 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ACMSDQ8TDX5 336 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 STRADBQ9C0K7 418 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 PLGRKTQ9HBL7 147 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 TRIM39Q9HCM9 518 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ETNK2Q9NVF9 386 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 TEX13CA0A0J9YWL9 993 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 KCNK1O00180 336 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 CCL16O15467 120 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ADSSP30520 456 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 LRRC32Q14392 662 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 C4orf46Q504U0 113 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 C1orf186Q6ZWK4 172 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 UBE2R2Q712K3 238 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-204ENST00000423058 GPR142Q7Z601 462 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ZSCAN4Q8NAM6 433 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-204ENST00000423058 C1orf216Q8TAB5 229 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 SMG7Q92540 1137 aaKnown RBP6.84□□□□□ -1.31
SCN1A-204ENST00000423058 CHID1Q9BWS9 393 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 DGCR6LQ9BY27 220 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 PAIP1Q9H074 479 aaKnown RBP6.84□□□□□ -1.31
SCN1A-204ENST00000423058 DPEP2Q9H4A9 486 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 TMBIM4Q9HC24 238 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms